[English] 日本語
EMN statistics
- Statistics of 3DEM data in EMDB & PDB -

-
Display options

-
Annotation about this statistics

  • Some data are modified
  • Counted not per "structre" but per data entry
  • Click column head to sort ([Shift] + click for multi-column sort)
  • Only representative items are shown.
  • -
    Statistics - CTF correction

    CTF correctionNumber of data entries
    2DX1
    3D CTF-CORRECTION WAS PERFORMED...1
    3D MAPS19
    ACE1
    ACE, IMAGE1
    ACE,MATLAB5
    ACE215
    ACE2 MICROGRAPH1
    AFTER 3D RECONSTRUCTION 3D MAPS...1
    ALGORITHM IN 2DX1
    ALL SPECIMEN AND SAMPLE PREPARA...1
    AMPLITUDE CORRECTION WAS PERFOR...1
    AS IMPLEMENTED IN CTTFIND4/RELION1
    AUTO3DEM6
    AVERAGE OF PARTICLES5
    BOTH EACH PARTICLE AND MICROGRAPH2
    BSOFT, PHASE FLIP ON EACH PARTICLE1
    BY DEFOCUS GROUPS4
    BY DEFOCUS GROUPS (WIENER FILTER)7
    BY IMAGE2
    BY MICROGRAPH14
    CCD FRAME5
    CCD FRAME 4096X40961
    CCTFFIND31
    CITFIT (EMAN) FOR EACH PARTICLE1
    CLASS AVERAGE2
    CLASS AVERAGES2
    COMBINATION OF DEFOCUSSED MAPS1
    COMPLETE PHASE FLIP AND AMPLITU...1
    CONTRAST TRANSFER FUNCTION (CTF...3
    CORRECTED AVERAGED LAYERLINES1
    CORRECTION FOR ASTIGMATISM INCLUDED1
    CORRECTION IN RELION BASED ON V...1
    CORRECTION WITHIN RELION BASED ...2
    CTF AMPLITUDE CORRECTION WAS PE...1
    CTF AMPLITUDE CORRECTION WAS PE...2
    CTF AMPLITUDE CORRECTION WAS PE...7
    CTF AND DECAY CORRECT1
    CTF AND DECAY CORRECTION OF EAC...13
    CTF CORRECTION WAS PERFORMED DU...6
    CTF DETERMINED FOR ALL PARTICLE...3
    CTF FIND1
    CTF FIT FOR EACH FILM/CCD, CORR...1
    CTF FIT FOR PARTICLES IN A MICR...1
    CTF FITTING WAS AUTOMATICALLY P...2
    CTF FLIP (CTFFIND3/IMAGES)2
    CTF MULTIPLICATION5
    CTF MULTIPLICATION AND MERGING ...3
    CTF MULTIPLICATION AND SUMMATIO...2
    CTF PARAMETERS CALCULATED FROM ...1
    CTF PARAMETERS OBTAINED FROM WH...13
    CTF PARAMETERS PROVIDED BY CAMP...1
    CTF PARAMETERS WERE APPLIED INT...1
    CTF PARAMETERS WERE CALCULATED ...2
    CTF PARAMETERS WERE ESTIMATED B...3
    CTF PARAMETERS WERE ESTIMATED U...2
    CTF PHASE FLIP OF EACH TOMOGRAM1
    CTF VALUES DETERMINED WITH CTFF...1
    CTF WAS CORRECTED PER PARTICLE1
    CTF WAS CORRECTED PER PARTICLE....1
    CTF WAS DETERMINED BY CTFFIND3 ...1
    CTF WAS DETERMINED FROM THE WHO...1
    CTF WAS DETERMINED FROM THE WHO...2
    CTF WAS DETERMINED FROM WHOLE F...4
    CTF WAS ESTIMATED FROM THE WHOL...1
    CTF WAS ESTIMATED USING APPION ...1
    CTF WAS ESTIMATED USING THE WHO...1
    CTF-DETERMINATION FOR EACH EACH...5
    CTF-TILT, EACH FILM/CCD1
    CTF.AUTO FUNCTION FROM EMAN2 WA...4
    CTF2, CTFTILT1
    CTFFIND23
    CTFFIND AND BSOFT1
    CTFFIND AND CTFTILT PHASE-CORRE...1
    CTFFIND FOR EACH FILM/CCD1
    CTFFIND FOR WHOLE IMAGE2
    CTFFIND ON MICROGRAPHS2
    CTFFIND, CONVOLUTION IMAGES, WI...2
    CTFFIND, HELIXBOXER1
    CTFFIND2 ON EACH IMAGE1
    CTFFIND351
    CTFFIND3 AND CTFIT2
    CTFFIND3 AND TRANSFER IMAGIC-51
    CTFFIND3 AND TRANSFER, IMAGIC 52
    CTFFIND3 AND TRANSFER, IMAGIC51
    CTFFIND3 EACH PARTICLE3
    CTFFIND3 IN RELION WAS USED FOR...1
    CTFFIND3 IN THE FREALIGN SOFTWA...2
    CTFFIND3 PER MICROGRAPH2
    CTFFIND3 WAS USED TO DETERMINE ...6
    CTFFIND3 WAS USED TO DETERMINE ...1
    CTFFIND3, FREALIGN PER MICROGRAPH9
    CTFFIND3, PHASE FLIP ON EACH PA...2
    CTFFIND3. EACH PARTICLE1
    CTFFIND48
    CTFFIND4 WAS USED FOR DETERMINI...2
    CTFFIND4, EACH PARTICLE9
    CTFFIND4; EACH IMAGE1
    CTFFINDV33
    CTFFIT EACH FILM/CCD1
    CTFILT3 WITH EACH PARTICLE ADJU...2
    CTFIND V33
    CTFIND3, ALL MICROGRAPH1
    CTFINDIII1
    CTFIT4
    CTFMIX7
    CTFPLOTTER1
    CTFSEARCH OR TTREFINE ON EACH IMAGE1
    CTFTILT7
    CTFTILT (GRIGORIEFF) FOR INITIA...1
    CTFTILT (SPECIFIC FOR EACH SEGMENT)10
    CTFTILT, SPIDER1
    CTFTILT-FREALIGN1
    DATA WERE TRUNCATED TO THE FIRS...1
    DEFOCUS ESTIMATED FOR EACH HELI...5
    DEFOCUS GROUP9
    DEFOCUS GROUP VOLUMES17
    DEFOCUS GROUP, WIENER FILTER4
    DEFOCUS GROUPING1
    DEFOCUS GROUPS25
    DEFOCUS GROUPS, WIENER FILTER12
    DEFOCUS OF EACH TILTS WAS ESTIM...1
    DEFOCUS PAIRS, EACH PARTICLE - ...2
    DEFOCUS VALUES WERE ASSIGNED TO...1
    DETERMINED USING ICE AND CORREC...1
    DIVISION BY 3D CTF^22
    DONE AT START OF PROCESSING1
    EACH BUNDLE1
    EACH CRYSTAL1
    EACH DEFOCUS GROUP5
    EACH DEFOCUS GROUP ON 3D LEVEL4
    EACH DEFOCUS VOLUME2
    EACH DETECTOR FRAME5
    EACH DIGITIZED IMAGE2
    EACH FILAMENT6
    EACH FILAMENT SEGMENT2
    EACH FILM/CCD443
    EACH FILM/CCD BY BINNARY PHASE FLIP1
    EACH FILM/CCD CTF-FIND 31
    EACH FILM/CCD DATASET5
    EACH FILM/CCD FOR UNTILTED, EAC...1
    EACH FILM/CCD OR EACH FOCAL PAIR2
    EACH FILM/CCD OR INCOHERENT SUM...1
    EACH FILM/CCD USING BSOFT10
    EACH FILM/CCD WAS ESTIMATED USI...2
    EACH FILM/CCD, CTFFIT31
    EACH FILM/CCD, ESTIMATED WITH C...4
    EACH FILM/CCD. ESTIMATION USING...2
    EACH FILM/CCDS12
    EACH HELICAL SUBUNIT1
    EACH IMAGE126
    EACH IMAGE USING ACE21
    EACH IMAGE USING BSOFT1
    EACH IMAGE, CTFFIND33
    EACH IMAGE, PHASES FLIPPED2
    EACH IMAGE, WIENER FILTER2
    EACH MICROPHOTOGRAPH1
    EACH MICROSCOPH1
    EACH MICROTUBULE4
    EACH PARTCILE PHASE FLIP1
    EACH PARTCILE USING CTFIND3 AND...1
    EACH PARTICLE763
    EACH PARTICLE (CONVOLVED)1
    EACH PARTICLE (GCTF)4
    EACH PARTICLE AFTER THE CTF WAS...1
    EACH PARTICLE AS IMPLEMENTED IN...1
    EACH PARTICLE BY GCTF4
    EACH PARTICLE CORRECTED USING BSOFT7
    EACH PARTICLE CTFTILT2
    EACH PARTICLE IN IMAGIC1
    EACH PARTICLE SET3
    EACH PARTICLE SET (BY MICROGRAPH)1
    EACH PARTICLE SET BY CTFIT1
    EACH PARTICLE WAS CORRECTED AND...1
    EACH PARTICLE WAS FULLY CTF COR...1
    EACH PARTICLE WITH EMAN3
    EACH PARTICLE WITH FULL CTF COR...1
    EACH PARTICLE, FULL CTF CORRECTION2
    EACH PARTICLE, PHASE REVERSAL1
    EACH PARTICLE, PHASE REVERSAL A...1
    EACH PARTICLE, PHASES FLIPPED2
    EACH PARTICLE, WIENER FACTOR 0.19
    EACH PARTICLE, WIENER FACTOR 0.24
    EACH PARTICLE/IMAGE2
    EACH PARTICLE; FULL CTF CORRECT...2
    EACH PARTILCE1
    EACH PHOTO1
    EACH PLATE9
    EACH PROJECTION4
    EACH PROJECTION, STRIP-BASED AP...1
    EACH SCANNED IMAGE1
    EACH SEGMENT2
    EACH SUBVOLUME2
    EACH TILT1
    EACH TILT IMAGE7
    EACH TILT IMAGE USING IMOD1
    EACH TILTED IMAGE6
    EACH TILTED IMAGE WITHIN TOMOGRAM4
    EACH TUBE2
    EACH TUBE IMAGE2
    EACH TUBE-CRYSTAL1
    EACH WHOLE FILM/CCD1
    EMAN1
    EMAN PER PARTICLE, WITH ASTIGMA...2
    EMAN22
    EMAN2 - EACH PARTICLE2
    EMAN2 PROTOCOL EACH PARTICLE1
    EMAN2, ONLY PHASE CORRECTION1
    ENTIRE FRAME1
    ESTIMATED WITH CTFFIND3, THEN P...7
    FILM5
    FILTERED AT 1ST ZERO5
    FIRST ZERO SET TO 18 ANGSTROM, ...6
    FLIPMIX1
    FOCUS GRADIENT CORRECTION1
    FOLLOWING 3D RECONSTRUCTION3
    FOLLOWING SCHUR ET AL, 20161
    FRAME2
    FRAMES5
    FREALIGN36
    FREALIGN (PER SEGMENT)6
    FULL CORRECTION1
    FULL CORRECTION ON 2D CLASS AVE...3
    FULL CTF CORRECTION IN RELION2
    FULL RECORDED IMAGE2
    GCTF1
    GLOBAL1
    GROUP DEFOCUS1
    IMAGES12
    IMAGES WERE CLOSE TO FOCUS, NO ...1
    IMOD16
    IMOD, EACH TILT IMAGE5
    IN FREALIGN6
    IN RELION3
    IN RELION SOFTWARE1
    INCLUDED AMPLITUDE AND PHASE CO...1
    INCLUDED AMPLITUDE AND PHASE CO...1
    INITIALLY DIFFERENT DEFOCUSES W...1
    INTEGRATED WITH FOURIER INVERSI...1
    INTEGRATED WITH FOURIER INVERSI...1
    LOCAL18
    LOCAL CTF CORRECTION2
    LOCAL CTF CORRECTION, AFTER MSA...6
    LOW PASS FILTER4
    LOW PASS FILTER TO THE FIRST ZE...2
    LOW PASS FILTER WAS APPLIED AFT...1
    LOW-PASS FILTER10
    MAPS DURING COMBINATION4
    MAPS FROM EACH DEFOCUS GROUP1
    MEASUREMENT OF POSITIONS OF THO...1
    MERGE OF FOCAL PAIR IMAGES OF S...1
    MERGED EACH PARTICLE FROM FOCAL...1
    MICROGRAPH32
    MICROGRAPH AND EACH PARTICLE4
    MICROGRAPH BASED2
    MICROGRAPH CORRECTED AND ONLY F...1
    MICROGRAPH LEVEL1
    MICROGRAPH-BASED1
    MICROGRAPH-BASED PHASE FLIP1
    MICROGRAPHS1
    MICROGRAPHS MULTIPLIED BY CTF1
    MRC1
    MSA-BASED1
    MULTIPLY IMAGES BY CTF, DIVIDE ...1
    N. GRIGORIEFF CTFFIND31
    N. GRIGORIEFFS CTFFIND1
    n/a4480
    NO1
    NO CORRECTION6
    NO CTF CORRECTION10
    NO CTF CORRECTION DONE BECAUSE ...1
    NONE14
    NORMALIZED SUM OF CTF MULTIPLIE...4
    ON 3D-VOLUME (SPIDER)4
    ON THE LEVEL OF 3D VOLUMES (SPI...4
    ON THE MICROGRAPH LEVEL7
    ON VOLUMES (SPIDER)5
    ON-THE-FLY CTF CORRECTION DURIN...3
    ON-THE-FLY CTF CORRECTION WAS P...1
    PARAMETERS DETERMINED USING A C...2
    PARAMETERS DETERMINED USING SCA...1
    PARAMTERS DETERMINED USING SCAT...1
    PARTICLE BASED4
    PARTICLE GROUPS WITH SIMILAR DE...1
    PARTICLE STACKS FOR EACH FILM/C...1
    PARTICLE-BASED6
    PARTICLES5
    PARTICLES FROM EACH FILM/CCD1
    PARTICLES PER FRAME1
    PARTICLES WERE CTF-CORRECTED DU...1
    PER-PARTICLE1
    PER-PARTICLE PHASE FLIP PRE-PRO...1
    PERFORMED IN EMAN21
    PERFORMED INTERNALLY IN RELION ...4
    PHASE AND ASTIGMATISM CORRECTIO...7
    PHASE CORRECTION1
    PHASE CORRECTION AT THE MICROGR...1
    PHASE CORRECTION FOR EACH IMAGE1
    PHASE CORRECTION FOR EACH PARTICLE2
    PHASE CORRECTION FOR EACH PARTI...2
    PHASE CORRECTION, EACH PARTICLE1
    PHASE FLIP72
    PHASE FLIP & AMPLITUDE2
    PHASE FLIP & AMPLITUDE DECAY20
    PHASE FLIP & AMPLITUDE DECAY CO...4
    PHASE FLIP (EACH PARTICLE)2
    PHASE FLIP > EACH FILM/CCD8
    PHASE FLIP > EACH FILM/CCD ASSU...1
    PHASE FLIP > EACH FILM/CCD IN I...1
    PHASE FLIP > EACH FILM/CCD IN I...1
    PHASE FLIP > EACH FILM/CCD ONLY1
    PHASE FLIP > EACH FILM/CCD, PER...4
    PHASE FLIP > EACH PARTICLE58
    PHASE FLIP > EACH PARTICLE WITH...1
    PHASE FLIP > EACH PARTICLE, AMP...1
    PHASE FLIP > EACH PARTICLE, BAS...2
    PHASE FLIP > EACH PARTICLE. AMP...1
    PHASE FLIP > WHOLE FILM/CCD1
    PHASE FLIP AND AMPLITUDE CORREC...2
    PHASE FLIP AND AMPLITUDE WEIGHT...8
    PHASE FLIP AND ELECTRON DIFFRACTION1
    PHASE FLIP CTF CORRECTION OF EA...1
    PHASE FLIP EACH IMAGE4
    PHASE FLIP EACH PARTICLE11
    PHASE FLIP ENTIRE FRAME9
    PHASE FLIP IN IMOD AFTER DEFOCU...2
    PHASE FLIP IN MICROGRAPH4
    PHASE FLIP MICROGRAPH1
    PHASE FLIP OF EACH PARTICLE5
    PHASE FLIP OF EACH TILTS11
    PHASE FLIP OF MICROGRAPH PATCHE...1
    PHASE FLIP OF MICROGRAPHS7
    PHASE FLIP OF PARTICLES IN DEFO...1
    PHASE FLIP OF TILT SERIES4
    PHASE FLIP OF WHOLE FILM/CCD4
    PHASE FLIP OF WHOLE FILM/CCDS2
    PHASE FLIP ON EACH PARTICLE FRO...1
    PHASE FLIP ON THE PROJECTIONS, ...1
    PHASE FLIP PARTICLES4
    PHASE FLIP PER MICROGRAPH1
    PHASE FLIP WAS PERFORMED DURING...1
    PHASE FLIP WAS PERFORMED USING ...2
    PHASE FLIP WITH EACH FILM/CCD2
    PHASE FLIP, FULL CTF CORRECTION2
    PHASE FLIP, WIENER3
    PHASE PLATE CTF CORRECTION1
    PHASE REVERSALS CORRECTED USING...1
    PHASE-FLIP ON EACH PARTICLE1
    PHASE-FLIPPPING ON EACH PARTICLE1
    PHASES AND AMPLITUDES, FOR EACH...2
    PHASES CORRECTED ONLY1
    PHASES OF EACH IMAGES ARE FLIPPED8
    PHASES OF EACH IMAGES WERE FLIPPED1
    PHASES OF EACH PARTICLE FLIPPED...1
    PHOELIX1
    PLATE7
    PROJECTION5
    RELION10
    RELION 2.0 CTF CORRECTION3
    RELION 3D CTF MODEL2
    RELION-BASED WIENER FILTERING1
    REVERSE PHASES1
    REVERSE PHASES FOR EACH PARTICLE1
    ROBEM24
    ROBEM AND IHRSR1
    SAVR PER FRAME1
    SEE PUBLICATION1
    SEE THE ADDITIONAL REFERENCE1
    SEGMENT-SPECIFIC CTF1
    SEGREGATION IN DEFOCUS GROUPS A...5
    SIDE FREALIGN1
    SPARX1
    SPIDER1
    SPIDER TF CTS2
    SPRING V0.831
    STRIP-BASED METHOD1
    SUBVLOUMES1
    SUBVOLUMES4
    SXCTER1
    THE WHOLE FILM/CCD1
    THIS WAS NOT DONE FOR RCT BUT F...1
    TILT SERIES PRIOR TO TOMOGRAM R...1
    TILT-DEPENDENT PHASE FLIP1
    TO EACH PARTICLE2
    TOMOCTF23
    TOMOCTF (STRIP-BASED PERIODOGRAM)3
    TOMOCTF METHOD2
    TTREFINE1
    VOLUME3
    VOLUME CORRECTION IN DEFOCUS GROUPS2
    VOLUME WAS ADDITIONALLY B-FACTO...1
    VOLUMES1
    WAD DONE PER PARTICLE AFTER THE...1
    WAS INTEGRATED INTO THE BACK-PR...1
    WAS PERFORMED BEFORE CLASSIFICA...4
    WAS PERFORMED INSIDE RELION 1.41
    WAS PERFORMED INTERNALLY IN RELION1
    WAS PERFORMED INTERNALLY IN REL...2
    WAS PERFORMED ON EACH PROJECTION1
    WAS PERFORMED ON THE FLY DURING...2
    WAS PERFORMED USING THE CTFPHAS...23
    WEINER FILTER18
    WHOLE FILM/CCD71
    WHOLE FILM/CCD - UNITILTED IMAGES17
    WHOLE FILM/CCDS2
    WHOLE IMAGE17
    WHOLE PARTICLE1
    WIENER FILTER10
    WIENER FILTER OF DEFOCUS GROUP ...1
    WIENER FILTER OF DEFOCUS GROUPS3
    WIENER FILTER OF VOLUMES FROM F...2
    WIENER FILTER ON 3D VOLUMES5
    WIENER FILTER ON 3D VOLUMES (SP...1
    WIENER FILTER ON VOLUMES1
    WIENER FILTER WEIGHTING EACH PA...2
    WIENER FILTER, DEFOCUS GROUPS6
    WIENER FILTERING OF DEFOCUS GRO...1
    WIENER FILTERING ON VOLUMES1
    WIENER FILTERING, MADE ON TILT ...1
    WIENER-TYPE FILTER3
    WITH REFERENCE TO X-RAY SCATTER...1
    WITH WIENER FILTER WHEN 2D AVER...1
    WITHIN RELION AND FREALIGN4
    YES1

    +
    About EMN statistics

    -
    EMN Statistics

    Statistics of 3DEM data in table and graph styles

    • The table can be sorted. Click the column header to be sorted. (second click to reverse, [Shift]+click for multi-column sort)
    • To show the bar graph in table mode, point the column/row header by mouse courser.
    • To search the correspoinding data, click the cell of value.
    • Examples:

    Related info.: EMDB / PDB / Q: What is the data source of EM Navigator? / EM Navigator / Mar 30, 2013. New page of in EM Navigator, statistics

    Read more