+データを開く
-基本情報
登録情報 | データベース: EMDB / ID: EMD-6151 | |||||||||
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タイトル | Structures of Protective Antibodies Reveal Sites of Vulnerability on Ebola Virus | |||||||||
マップデータ | Reconstruction of Ebola virus glycoprotein in complex with Fab c2G4 | |||||||||
試料 |
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キーワード | Ebola / Antibody cocktails / mAbs / ZMAb / ZMapp / MB-003 | |||||||||
生物種 | Ebola virus sp. (エボラウイルス) / Homo sapiens (ヒト) | |||||||||
手法 | 単粒子再構成法 / ネガティブ染色法 / 解像度: 24.0 Å | |||||||||
データ登録者 | Murin CD / Fusco ML / Bornholdt ZA / Qiu X / Olinger GG / Zeitlin L / Kobinger GP / Ward AB / Saphire EO | |||||||||
引用 | ジャーナル: Proc Natl Acad Sci U S A / 年: 2014 タイトル: Structures of protective antibodies reveal sites of vulnerability on Ebola virus. 著者: Charles D Murin / Marnie L Fusco / Zachary A Bornholdt / Xiangguo Qiu / Gene G Olinger / Larry Zeitlin / Gary P Kobinger / Andrew B Ward / Erica Ollmann Saphire / 要旨: Ebola virus (EBOV) and related filoviruses cause severe hemorrhagic fever, with up to 90% lethality, and no treatments are approved for human use. Multiple recent outbreaks of EBOV and the likelihood ...Ebola virus (EBOV) and related filoviruses cause severe hemorrhagic fever, with up to 90% lethality, and no treatments are approved for human use. Multiple recent outbreaks of EBOV and the likelihood of future human exposure highlight the need for pre- and postexposure treatments. Monoclonal antibody (mAb) cocktails are particularly attractive candidates due to their proven postexposure efficacy in nonhuman primate models of EBOV infection. Two candidate cocktails, MB-003 and ZMAb, have been extensively evaluated in both in vitro and in vivo studies. Recently, these two therapeutics have been combined into a new cocktail named ZMapp, which showed increased efficacy and has been given compassionately to some human patients. Epitope information and mechanism of action are currently unknown for most of the component mAbs. Here we provide single-particle EM reconstructions of every mAb in the ZMapp cocktail, as well as additional antibodies from MB-003 and ZMAb. Our results illuminate key and recurring sites of vulnerability on the EBOV glycoprotein and provide a structural rationale for the efficacy of ZMapp. Interestingly, two of its components recognize overlapping epitopes and compete with each other for binding. Going forward, this work now provides a basis for strategic selection of next-generation antibody cocktails against Ebola and related viruses and a model for predicting the impact of ZMapp on potential escape mutations in ongoing or future Ebola outbreaks. | |||||||||
履歴 |
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-構造の表示
ムービー |
ムービービューア |
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構造ビューア | EMマップ: SurfViewMolmilJmol/JSmol |
添付画像 |
-ダウンロードとリンク
-EMDBアーカイブ
マップデータ | emd_6151.map.gz | 1.6 MB | EMDBマップデータ形式 | |
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ヘッダ (付随情報) | emd-6151-v30.xml emd-6151.xml | 10.3 KB 10.3 KB | 表示 表示 | EMDBヘッダ |
画像 | emd_6151.jpg | 102.7 KB | ||
アーカイブディレクトリ | http://ftp.pdbj.org/pub/emdb/structures/EMD-6151 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-6151 | HTTPS FTP |
-検証レポート
文書・要旨 | emd_6151_validation.pdf.gz | 78.5 KB | 表示 | EMDB検証レポート |
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文書・詳細版 | emd_6151_full_validation.pdf.gz | 77.6 KB | 表示 | |
XML形式データ | emd_6151_validation.xml.gz | 494 B | 表示 | |
アーカイブディレクトリ | https://ftp.pdbj.org/pub/emdb/validation_reports/EMD-6151 ftp://ftp.pdbj.org/pub/emdb/validation_reports/EMD-6151 | HTTPS FTP |
-関連構造データ
-リンク
EMDBのページ | EMDB (EBI/PDBe) / EMDataResource |
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-マップ
ファイル | ダウンロード / ファイル: emd_6151.map.gz / 形式: CCP4 / 大きさ: 1.9 MB / タイプ: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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注釈 | Reconstruction of Ebola virus glycoprotein in complex with Fab c2G4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ボクセルのサイズ | X=Y=Z: 4.1 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
密度 |
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対称性 | 空間群: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
詳細 | EMDB XML:
CCP4マップ ヘッダ情報:
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-添付データ
-試料の構成要素
-全体 : Fab fragment of c2G4 chimerized human monoclonal IgG1 antibody bo...
全体 | 名称: Fab fragment of c2G4 chimerized human monoclonal IgG1 antibody bound to Ebola virus glycoprotein |
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要素 |
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-超分子 #1000: Fab fragment of c2G4 chimerized human monoclonal IgG1 antibody bo...
超分子 | 名称: Fab fragment of c2G4 chimerized human monoclonal IgG1 antibody bound to Ebola virus glycoprotein タイプ: sample / ID: 1000 / 集合状態: Three Fab fragments bound to a single GP / Number unique components: 2 |
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分子量 | 理論値: 600 KDa |
-分子 #1: Ebola virus glycoprotein
分子 | 名称: Ebola virus glycoprotein / タイプ: protein_or_peptide / ID: 1 / Name.synonym: EBOV GP / コピー数: 1 / 集合状態: trimer / 組換発現: Yes |
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由来(天然) | 生物種: Ebola virus sp. (エボラウイルス) |
分子量 | 理論値: 450 KDa |
組換発現 | 生物種: Drosophila melanogaster (キイロショウジョウバエ) 組換細胞: Schneider 2 (S2) / 組換プラスミド: pMT-puro |
-分子 #2: chimerized human IgG1 antigen binding fragment c2G4
分子 | 名称: chimerized human IgG1 antigen binding fragment c2G4 / タイプ: protein_or_peptide / ID: 2 / Name.synonym: c2G4 Fab / コピー数: 3 / 集合状態: monomer / 組換発現: Yes |
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由来(天然) | 生物種: Homo sapiens (ヒト) / 別称: human |
組換発現 | 生物種: Nicotiana benthamiana (ナス科) |
-実験情報
-構造解析
手法 | ネガティブ染色法 |
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解析 | 単粒子再構成法 |
試料の集合状態 | particle |
-試料調製
濃度 | 0.03 mg/mL |
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緩衝液 | pH: 7.4 / 詳細: 20 mM Tris, 150 mM NaCl |
染色 | タイプ: NEGATIVE 詳細: To prepare negative stain grids, a 4 uL aliquot of each complex, which had been diluted to a concentration of ~0.03 ug/mL with TBS buffer, was placed for 15 seconds onto carbon-coated 400 Cu ...詳細: To prepare negative stain grids, a 4 uL aliquot of each complex, which had been diluted to a concentration of ~0.03 ug/mL with TBS buffer, was placed for 15 seconds onto carbon-coated 400 Cu mesh grids that had been plasma cleaned for 20 s (Gatan), blotted off on the edge of the grid, then immediately stained for 30 s with 4 uL of 2% uranyl formate. The stain was blotted off on the edge of the grid and the grid was allowed to dry. |
グリッド | 詳細: 400 Cu mesh |
凍結 | 凍結剤: NONE / 装置: OTHER |
-電子顕微鏡法
顕微鏡 | FEI TECNAI F20 |
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日付 | 2014年1月15日 |
撮影 | カテゴリ: CCD / フィルム・検出器のモデル: OTHER / 実像数: 55 |
電子線 | 加速電圧: 120 kV / 電子線源: TUNGSTEN HAIRPIN |
電子光学系 | 照射モード: FLOOD BEAM / 撮影モード: BRIGHT FIELD / 最大 デフォーカス(公称値): 1.0 µm / 最小 デフォーカス(公称値): 1.0 µm / 倍率(公称値): 52000 |
試料ステージ | 試料ホルダーモデル: OTHER |
実験機器 | モデル: Tecnai F20 / 画像提供: FEI Company |
-画像解析
最終 再構成 | 解像度のタイプ: BY AUTHOR / 解像度: 24.0 Å / 解像度の算出法: OTHER / ソフトウェア - 名称: EMAN2, XMipp, IMAGIC / 使用した粒子像数: 5772 |
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