+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDG34 |
---|---|
Sample | Subgenomic flavivirus RNAs from West nile virus
|
Biological species | West Nile virus |
Citation | Date: 2019 Sep 10 Title: Long non‐coding subgenomic flavivirus RNAs have extended 3D structures and are flexible in solution Authors: Zhang Y / Zhang Y / Liu Z / Cheng M / Ma J / Wang Y / Qin C |
Contact author |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Data source
SASBDB page | SASDG34 |
---|
-Related structure data
Related structure data | C: citing same article (ref.) |
---|---|
Similar structure data |
-Models
Model #3586 | Type: dummy / Software: (2.8.3) / Radius of dummy atoms: 7.00 A / Chi-square value: 1.908 / P-value: 0.016729 Search similar-shape structures of this assembly by Omokage search (details) |
---|---|
Model #3603 | Type: atomic / Chi-square value: 1.402 Search similar-shape structures of this assembly by Omokage search (details) |
Model #3604 | Type: atomic / Chi-square value: 1.402 Search similar-shape structures of this assembly by Omokage search (details) |
Model #3605 | Type: atomic / Chi-square value: 1.402 Search similar-shape structures of this assembly by Omokage search (details) |
-Sample
Sample | Name: Subgenomic flavivirus RNAs from West nile virus / Specimen concentration: 0.75-3.00 |
---|---|
Buffer | Name: 20mM Tris-HCl, 100mM NaCl, 5mM MgCl2 / pH: 7.5 |
Entity #1838 | Name: WNV-sfRNA / Type: RNA Description: Subgenomic flavivirus RNAs from West nile virus Formula weight: 170.058 / Num. of mol.: 1 / Source: West Nile virus Sequence: GGAGUCAGGC CAGAUUAAUG CUGCCACCGG AAGUUGAGUA GACGGUGCUG CCUGCGGCUC AACCCCAGGA GGACUGGGUG ACCAAAGCUG CGAGGUGAUC CACGUAAGCC CUCAGAACCG UCUCGGAAGG AGGACCCCAC GUGCUUUAGC CUCAAGGCCC AGUGUCAGAC ...Sequence: GGAGUCAGGC CAGAUUAAUG CUGCCACCGG AAGUUGAGUA GACGGUGCUG CCUGCGGCUC AACCCCAGGA GGACUGGGUG ACCAAAGCUG CGAGGUGAUC CACGUAAGCC CUCAGAACCG UCUCGGAAGG AGGACCCCAC GUGCUUUAGC CUCAAGGCCC AGUGUCAGAC CACACUCUAG UGUGCCACUC UGCGGAGAGU GCAGUCUGCG AUAGUGCCCC AGGUGGACUG GGUUAACAAA GGCAAAACAU CGCCCCACGC GGCCAUAACC CUGGCUAUGG UGUUAACCAG GGAGAAGGGA CUAGAGGUUA GAGGAGACCC CGCGUCAAAA AGUGCACGGC CCAACUUGGC UGAAGCUGUA AGCCAAGGGA AGGACUAGAG GUUAGAGGAG ACCCCGUGCC AAAAACACCA AAAGAAACAG CAUAUUGACA CCUGGGAUAG ACUAGGGGAU CUUCUGCUCU GCACAACCAG CCACACGGCA CAGUGCGCCG AUAUAGGUGG CUGGUGGUGC GAGAACACAG GAUCU |
-Experimental information
Beam | Instrument name: Advanced Photon Source (APS), Argonne National Laboratory 12ID-B SAXS/WAXS City: Lemont, IL / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.08857 Å / Dist. spec. to detc.: 2 mm | |||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Detector | Name: Pilatus 2M | |||||||||||||||||||||||||||
Scan | Title: Subgenomic flavivirus RNAs from West nile virus / Measurement date: Mar 13, 2017 / Storage temperature: 4 °C / Cell temperature: 25 °C / Exposure time: 1 sec. / Number of frames: 30 / Unit: 1/A /
| |||||||||||||||||||||||||||
Distance distribution function P(R) | Sofotware P(R): GNOM 4.6 / Number of points: 149 /
| |||||||||||||||||||||||||||
Result | Type of curve: extrapolated Comments: The subtracted SAXS data series used to generate the final extrapolated to zero-concentration profile displayed in this entry are provided in the full entry zip archive. The ab initio dummy ...Comments: The subtracted SAXS data series used to generate the final extrapolated to zero-concentration profile displayed in this entry are provided in the full entry zip archive. The ab initio dummy atom model represents the averaged spatial disposition of the RNA in solution (DAMFILT model), derived from several aligned individual models (corresponding fit).
|