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Yorodumi- SASDAY8: HCoV-229E Nsp10 in the presence of Zn (HCoV-229E Non-structural p... -
+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDAY8 |
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Sample | HCoV-229E Nsp10 in the presence of Zn
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Function / homology | Function and homology information host cell membrane / viral genome replication / transferase activity / omega peptidase activity / symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of IRF3 activity / symbiont-mediated perturbation of host ubiquitin-like protein modification / ubiquitinyl hydrolase 1 / cysteine-type deubiquitinase activity / Hydrolases; Acting on peptide bonds (peptidases); Cysteine endopeptidases / host cell perinuclear region of cytoplasm ...host cell membrane / viral genome replication / transferase activity / omega peptidase activity / symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of IRF3 activity / symbiont-mediated perturbation of host ubiquitin-like protein modification / ubiquitinyl hydrolase 1 / cysteine-type deubiquitinase activity / Hydrolases; Acting on peptide bonds (peptidases); Cysteine endopeptidases / host cell perinuclear region of cytoplasm / viral protein processing / induction by virus of host autophagy / viral translational frameshifting / cysteine-type endopeptidase activity / virus-mediated perturbation of host defense response / proteolysis / RNA binding / zinc ion binding / membrane Similarity search - Function |
Biological species | Human coronavirus 229E |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDAY8 |
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-Related structure data
Similar structure data |
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-External links
Related items in Molecule of the Month |
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-Models
Model #340 | Type: atomic / Software: CORAL / Radius of dummy atoms: 1.90 A / Chi-square value: 0.741 / P-value: 0.008510 Search similar-shape structures of this assembly by Omokage search (details) |
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Model #341 | Type: dummy / Software: DAMMIF (r4456) / Radius of dummy atoms: 1.20 A / Chi-square value: 0.391876 / P-value: 0.046000 Search similar-shape structures of this assembly by Omokage search (details) |
-Sample
Sample | Name: HCoV-229E Nsp10 in the presence of Zn / Specimen concentration: 1.50-3.10 |
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Buffer | Name: HEPES / Concentration: 25.00 mM / pH: 7.6 / Comment: buffer D / Composition: 280 mM NaCl 2 mM DTT 500 µM ZnCl2 |
Entity #206 | Name: Nsp10 / Type: protein / Description: HCoV-229E Non-structural protein 10 / Formula weight: 14.5 / Num. of mol.: 1 / Source: Human coronavirus 229E / References: UniProt: P0C6U2 Sequence: AGKQTEFVSN SHLLTHCSFA VDPAAAYLDA VKQGAKPVGN CVKMLTNGSG SGQAITCTID SNTTQDTYGG ASVCIYCRAH VAHPTMDGFC QYKGKWVQVP IGTNDPIRFC LENTVCKVCG CWLNHGCTCD RTAIQ |
-Experimental information
Beam | Instrument name: DORIS III X33 / City: Hamburg / 国: Germany / Shape: 0.6 / Type of source: X-ray synchrotron / Wavelength: 0.15 Å / Dist. spec. to detc.: 2.7 mm | ||||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 1M-W / Pixsize x: 0.172 mm | ||||||||||||||||||||||||||||||||
Scan | Title: Nsp10 in presence of Zn / Measurement date: Sep 25, 2012 / Cell temperature: 10 °C / Exposure time: 15 sec. / Number of frames: 8 / Unit: 1/nm /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 1553 /
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Result | Type of curve: merged / Standard: BSA /
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