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- SASDEF9: TraI of Neisseria gonorrhoeae (TraI) -

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ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDEF9
SampleTraI of Neisseria gonorrhoeae
  • TraI (protein), TraI, Neisseria gonorrhoeae
Function / homologyUncharacterised domain, helicase/relaxase, putative / Putative helicase / Putative conjugal transfer nickase/helicase TraI, C-terminal / Putative conjugal transfer nickase/helicase TraI C-term / Winged helix DNA-binding domain superfamily / Winged helix-like DNA-binding domain superfamily / TraI
Function and homology information
Biological speciesNeisseria gonorrhoeae (bacteria)
CitationDate: 2019 Jul 5
Title: DNA processing by the MOBH family relaxase TraI encoded within the gonococcal genetic island
Authors: Heilers J / Reiners J / Heller E / Golzer A / Smits S
Contact author
  • Jens Reiners (Heinrich Heine University Düsseldorf, Düsseldorf, Germany)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #2746
Type: dummy / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 1.85
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: TraI of Neisseria gonorrhoeae / Specimen concentration: 0.69-9.96
BufferName: 50 mM TRIS-HCl 100 mM NaCl / pH: 8
Entity #1431Name: TraI / Type: protein / Description: TraI / Formula weight: 91.243 / Num. of mol.: 1 / Source: Neisseria gonorrhoeae / References: UniProt: Q5EPC7
Sequence: MSNQNIVNDR FRILNAHELI QVLDLSPQIS GIKMNLGLSD ENWSKDALPF LEKYIAFVQR LPASESHHHA GDGGLVRHTL DVAALALVAS TSQSWPPNAK TEEIAKKTAV WRYGIMCAAL LHDVGKTVTG FQVELFDSAI SLEKLLWLPD TGSMAESGKL YYRVEFPDAK ...Sequence:
MSNQNIVNDR FRILNAHELI QVLDLSPQIS GIKMNLGLSD ENWSKDALPF LEKYIAFVQR LPASESHHHA GDGGLVRHTL DVAALALVAS TSQSWPPNAK TEEIAKKTAV WRYGIMCAAL LHDVGKTVTG FQVELFDSAI SLEKLLWLPD TGSMAESGKL YYRVEFPDAK SAYSTHAEIA WTFFQALVPS HVRQWLATTD PNLMITLRNY LSGKKDGSPL EQLIKNADMT SVSRDLRSGS RQRFSTAKRK PFIETIMETL KEMLSDRGVH FSIATTAGGD LFRKGDRIYL MSKNVPDYIR QYLRKNQHPA AGSFPADNQR IFDTLFEYRA VIPPENDPHR AINHIEVEFT RMDGEKVRNI FSVLCFNAKT LYPDGDYPTE FLGNLSEVSA KKEIPDVVVS EDKVSTQIQG AEDNPVTMTK DKMDFLSIQP VTAEQPPLPE KNQTETANSA FDNSMNTAAP AENKSSESEK AKEPGYGTID NLIENFNLIE ADSEQTESTK SEAETAENAV NLVQENIRVE VKTETVDKPR AEVKETETDK APKTIKSGTK ASRKKLAGLF ADNRKPIGKT AEPDAQIKTT ETVTHQIDSE AVSLPESESA QNGMRELERL RLREPTSSPR PVQVMDDSEG LDSLASGVKN MAELEAIVSE RNLKKQSETE STEIVEDSVK AKHMEARDRG MQFLRWLADG LGDGSIAVNR SGATVHFIEQ GMLLVTPAVF RDYAGGVFNK SDTESLGPLT QKGFEALRLH ARTKKSSLHR VLTTNGSNRR LFYCYLIPEH NIKHIIQPGS RPQNNTDIKL DESDLLVMEQ KALEVLFQ

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Experimental information

BeamInstrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.099 Å / Dist. spec. to detc.: 2.867 mm
DetectorName: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm
Scan
Title: TraI of Neisseria gonorrhoeae / Measurement date: Mar 5, 2018 / Storage temperature: 4 °C / Cell temperature: 4 °C / Exposure time: 1 sec. / Number of frames: 10 / Unit: 1/nm /
MinMax
Q0.0466 4.7212
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 870 /
MinMax
Q0.0935756 4.17208
P(R) point1 870
R0 31.35
Result
Type of curve: merged
ExperimentalStandardPorod
MW89.61 kDa68.56 kDa149.52 kDa
Volume--293 nm3

P(R)GuinierGuinier error
Forward scattering, I069.83 67.36 0.27
Radius of gyration, Rg8.167 nm7.31 nm0.05

MinMax
D-31.35
Guinier point10 25

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