+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDEE9 |
---|---|
Sample | TraI_2_C domain of TraI
|
Function / homology | Uncharacterised domain, helicase/relaxase, putative / Putative helicase / Putative conjugal transfer nickase/helicase TraI, C-terminal / Putative conjugal transfer nickase/helicase TraI C-term / Winged helix DNA-binding domain superfamily / Winged helix-like DNA-binding domain superfamily / TraI Function and homology information |
Biological species | Neisseria gonorrhoeae (bacteria) |
Citation | Date: 2019 Jul 5 Title: DNA processing by the MOBH family relaxase TraI encoded within the gonococcal genetic island Authors: Heilers J / Reiners J / Heller E / Golzer A / Smits S |
Contact author |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Models
Model #2740 | Type: dummy / Radius of dummy atoms: 1.90 A / Chi-square value: 0.80 Search similar-shape structures of this assembly by Omokage search (details) |
---|---|
Model #2743 | Type: atomic / Chi-square value: 4.165 Search similar-shape structures of this assembly by Omokage search (details) |
-Sample
Sample | Name: TraI_2_C domain of TraI / Specimen concentration: 1.00-4.57 |
---|---|
Buffer | Name: 50 mM TRIS-HCl 100 mM NaCl / pH: 8 |
Entity #1430 | Name: TraI_2_C / Type: protein / Description: TraI_2_C domain of TraI / Formula weight: 20.813 / Num. of mol.: 1 / Source: Neisseria gonorrhoeae / References: UniProt: Q5EPC7 Sequence: MSASGVKNMA ELEAIVSERN LKKQSETEST EIVEDSVKAK HMEARDRGMQ FLRWLADGLG DGSIAVNRSG ATVHFIEQGM LLVTPAVFRD YAGGVFNKSD TESLGPLTQK GFEALRLHAR TKKSSLHRVL TTNGSNRRLF YCYLIPEHNI KHIIQPGSRP QNNTDIKLDE SDLLVMEQKA LEVLFQ |
-Experimental information
Beam | Instrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.099 Å / Dist. spec. to detc.: 2.867 mm | |||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Detector | Name: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm | |||||||||||||||||||||||||||||||||
Scan | Title: TraI_2_C domain of TraI / Measurement date: Jul 11, 2018 / Storage temperature: 4 °C / Cell temperature: 4 °C / Exposure time: 1 sec. / Number of frames: 10 / Unit: 1/nm /
| |||||||||||||||||||||||||||||||||
Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 701 /
| |||||||||||||||||||||||||||||||||
Result | Type of curve: merged Comments: Please note: The protein contains unstructured regions that impart a level of flexibility to the overall structure in solution. As a consequence, the conformational state(s) sampled by the ...Comments: Please note: The protein contains unstructured regions that impart a level of flexibility to the overall structure in solution. As a consequence, the conformational state(s) sampled by the protein differs from - and cannot be captured by - the single predicted PHYRE2 atomistic model/representation displayed in this entry (as evidenced by the poor fit of the model to the SAXS data; bottom).
|