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Yorodumi- SASDEC9: Flagellar brake protein YcgR in complex with c-di-GMP from Escher... -
+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDEC9 |
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Sample | Flagellar brake protein YcgR in complex with c-di-GMP from Escherichia coli
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Function / homology | Function and homology information regulation of bacterial-type flagellum-dependent cell motility by regulation of motor speed / negative regulation of bacterial-type flagellum-dependent cell motility / bacterial-type flagellum basal body / cyclic-di-GMP binding / bacterial-type flagellum-dependent cell motility Similarity search - Function |
Biological species | Escherichia coli (strain K12) (bacteria) |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDEC9 |
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-Related structure data
Similar structure data |
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-External links
Related items in Molecule of the Month |
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-Models
Model #2731 | Type: dummy / Radius of dummy atoms: 2.60 A / Chi-square value: 0.841 / P-value: 0.000320 Search similar-shape structures of this assembly by Omokage search (details) |
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Model #2733 | Type: atomic / Chi-square value: 1.231 Search similar-shape structures of this assembly by Omokage search (details) |
-Sample
Sample | Name: Flagellar brake protein YcgR in complex with c-di-GMP from Escherichia coli Specimen concentration: 0.60-4.80 |
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Buffer | Name: 20 mM HEPES, 150mM NaCl, 10% glycerol, / pH: 7.5 |
Entity #1418 | Name: YcgR-c-di-GMP / Type: protein Description: Flagellar brake protein YcgR in complex with c-di-GMP Formula weight: 29.376 / Num. of mol.: 1 / Source: Escherichia coli (strain K12) / References: UniProt: P76010 Sequence: MSHYHEQFLK QNPLAVLGVL RDLHKAAIPL RLSWNGGQLI SKLLAITPDK LVLDFGSQAE DNIAVLKAQH ITITAETQGA KVEFTVEQLQ QSEYLQLPAF ITVPPPTLWF VQRRRYFRIS APLHPPYFCQ TKLADNSTLR FRLYDLSLGG MGALLETAKP AELQEGMRFA ...Sequence: MSHYHEQFLK QNPLAVLGVL RDLHKAAIPL RLSWNGGQLI SKLLAITPDK LVLDFGSQAE DNIAVLKAQH ITITAETQGA KVEFTVEQLQ QSEYLQLPAF ITVPPPTLWF VQRRRYFRIS APLHPPYFCQ TKLADNSTLR FRLYDLSLGG MGALLETAKP AELQEGMRFA QIEVNMGQWG VFHFDAQLIS ISERKVIDGK NETITTPRLS FRFLNVSPTV ERQLQRIIFS LEREAREKAD KVRDKLAAAL EHHHHHH |
-Experimental information
Beam | Instrument name: Shanghai Synchrotron Radiation Facility (SSRF) BL19U2 City: Shanghai / 国: China / Type of source: X-ray synchrotron / Wavelength: 0.103 Å | ||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm | ||||||||||||||||||||||||||||||
Scan | Title: Flagellar brake protein YcgR in complex with c-di-GMP from Escherichia coli Measurement date: Jan 4, 2016 / Storage temperature: 4 °C / Cell temperature: 4 °C / Exposure time: 1 sec. / Number of frames: 20 / Unit: 1/A /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 690 /
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Result | Type of curve: merged /
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