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- SASDDP9: C-terminal half of pseudorabies virus tegument protein UL37 -

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Basic information

Entry
Database: SASBDB / ID: SASDDP9
SampleC-terminal half of pseudorabies virus tegument protein UL37
  • Tegument protein UL37 (protein), Suid alphaherpesvirus 1
Function / homologyHerpesvirus UL37 / Herpesvirus UL37 tegument protein / virion assembly / metal ion binding / UL37
Function and homology information
Biological speciesSuid alphaherpesvirus 1
CitationDate: 2018 Aug 30
Title: The dynamic nature of the conserved tegument protein UL37 of herpesviruses.
Authors: "Koenigsberg A", "Heldwein E"
Contact author
  • Andrea Koenigsberg (Tufts University School of Medicine)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #2171
Type: dummy / Radius of dummy atoms: 3.60 A / Symmetry: P1 / Chi-square value: 1.120
Search similar-shape structures of this assembly by Omokage search (details)
Model #2172
Type: dummy / Software: (5.0) / Radius of dummy atoms: 3.50 A / Symmetry: P1 / Comment: Mean NSD (10 models ) = 0.78 / Chi-square value: 1.120
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: C-terminal half of pseudorabies virus tegument protein UL37
Specimen concentration: 6 mg/ml
BufferName: 100 mM HEPES 150 mM NaCl 5% glycerol 0.1 mM tris(2-carboxyethyl)phosphine (TCEP)
pH: 7.5
Entity #1187Type: protein / Description: Tegument protein UL37 / Formula weight: 48.525 / Num. of mol.: 1 / Source: Suid alphaherpesvirus 1 / References: UniProt: Q911W0
Sequence: GPGSGLRADG AGETPMEAPT SAALVDLAAA ADLVNYPSMV HLEAMADPSF APFFVVTAVA DAYNCLLTAS YDRRADLAQV LTWARDYGAG LIPNVSGYRT KLAALVAALA REDLTVAHAR NVEALAHELH GVVRAAAEVL EAPAPAPPSL AASAFLGDLL ARALRRRLED ...Sequence:
GPGSGLRADG AGETPMEAPT SAALVDLAAA ADLVNYPSMV HLEAMADPSF APFFVVTAVA DAYNCLLTAS YDRRADLAQV LTWARDYGAG LIPNVSGYRT KLAALVAALA REDLTVAHAR NVEALAHELH GVVRAAAEVL EAPAPAPPSL AASAFLGDLL ARALRRRLED MATHTGDLLD SMATAAGAVA ERVVALERLF TCRFVFRGRT ASVFAPGEGG PCLGTWRLAD VVDAVGAFRA EVNTHRSDMR ADAGALRGVM AQTTEALREC EALGLQAPVF RTLCADHARL SKLQTSAALT AGRLQAATVL RPVERFLARW DLVSAALRRA VDERGVLALV ATLRETWTEA REEQAPPAPA FTPEELREAA DRVLGDYHEV AGDGEAGPDA VPLSASVNVR DWAAVNLEVL RRGARAPDDA SAGVPLLAQT WVPVDRLLAE VDAVSKGGSG GSWSHPQFEK

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Experimental information

BeamInstrument name: Cornell High Energy Synchrotron Source (CHESS) G1
City: Ithaca, NY / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.124612 Å / Dist. spec. to detc.: 1.531 mm
DetectorName: Pilatus 200K / Type: Pilatus / Pixsize x: 172 mm
Scan
Title: C-terminal half of Pseudorabiesvirus tegument protein UL37
Measurement date: Jun 3, 2017 / Storage temperature: 4 °C / Cell temperature: 4 °C / Exposure time: 2 sec. / Number of frames: 300 / Unit: 1/A /
MinMax
Q0.0074 0.2808
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 480 /
MinMax
Q0.007412 0.280191
P(R) point1 480
R0 140
Result
Type of curve: sec
Comments: Additional SEC parameters: Column type: Superdex 200 Increase 5/150 GE; Flow rate: 0.3 ml/min; Sample injection concentration: 6 mg/ml; Injection volume: 100 µl. The models displayed in ...Comments: Additional SEC parameters: Column type: Superdex 200 Increase 5/150 GE; Flow rate: 0.3 ml/min; Sample injection concentration: 6 mg/ml; Injection volume: 100 µl. The models displayed in this entry are: Top, individual best-fit DAMMIN model and; Bottom, the bead-occupancy and volume-corrected averaged spatial representation of the protein (DAMFILT model) obtained from ten individual DAMMIN runs (NSD = 0.78; resolution estimate = 4.1 nm).
ExperimentalPorod
MW48 kDa-
Volume-71 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I00.01739 9.0E-5 0.01746 0.0001
Radius of gyration, Rg4.3 nm0.02 4.21 nm0.04

MinMax
D-14
Guinier point2 41

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