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Yorodumi- SASDDQ8: The complex formed between the class II apurinic/apyrimidinic-end... -
+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDDQ8 |
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Sample | The complex formed between the class II apurinic/apyrimidinic-endonuclease/3'-5' exonuclease III (XthA) bound to the BRCT domain from Mycobacterium tuberculosis DNA ligase
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Function / homology | Function and homology information : / DNA ligase (NAD+) / DNA ligase (NAD+) activity / base-excision repair, DNA ligation / exodeoxyribonuclease III / DNA ligation / peptidoglycan-based cell wall / endonuclease activity / DNA replication / DNA repair ...: / DNA ligase (NAD+) / DNA ligase (NAD+) activity / base-excision repair, DNA ligation / exodeoxyribonuclease III / DNA ligation / peptidoglycan-based cell wall / endonuclease activity / DNA replication / DNA repair / magnesium ion binding / DNA binding / plasma membrane / cytosol Similarity search - Function |
Biological species | Mycobacterium tuberculosis (bacteria) |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDDQ8 |
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-Related structure data
Similar structure data |
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-External links
Related items in Molecule of the Month |
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-Models
Model #2154 | Type: dummy / Radius of dummy atoms: 3.75 A / Chi-square value: 1.301 Search similar-shape structures of this assembly by Omokage search (details) |
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-Sample
Sample | Name: The complex formed between the class II apurinic/apyrimidinic-endonuclease/3'-5' exonuclease III (XthA) bound to the BRCT domain from Mycobacterium tuberculosis DNA ligase Specimen concentration: 4.6 mg/ml / Entity id: 1121 / 1122 |
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Buffer | Name: 50 mM Tris-HCl 500 mM NaCl 5mM β-mercaptoethanol / pH: 8 |
Entity #1121 | Name: MtbXthA / Type: protein / Description: Probable exodeoxyribonuclease III protein XthA / Formula weight: 32.931 / Num. of mol.: 1 / Source: Mycobacterium tuberculosis / References: UniProt: A0A0T9L251 Sequence: MPDGTIDGGH PQRPASPRLR SPLLRLATWN VNSIRTRLDR VLDWLGRADV DVLAMQETKC PDGQFPALPL FELGYDVAHV GFDQWNGVAI ASRVGLDDVR VGFDGQPSWS GKPEVAATTE ARALGATCGG IRVWSLYVPN GRALDDPHYT YKLDWLAALR DTAEGWLRDD ...Sequence: MPDGTIDGGH PQRPASPRLR SPLLRLATWN VNSIRTRLDR VLDWLGRADV DVLAMQETKC PDGQFPALPL FELGYDVAHV GFDQWNGVAI ASRVGLDDVR VGFDGQPSWS GKPEVAATTE ARALGATCGG IRVWSLYVPN GRALDDPHYT YKLDWLAALR DTAEGWLRDD PAAPIALMGD WNIAPTDDDV WSTEFFAGCT HVSEPERKAF NAIVDAQFTD VVRPFTPGPG VYTYWDYTQL RFPKKQGMRI DFILGSPALA ARVMDAQIVR EERKGKAPSD HAPVLVDLHA GHHHHHH |
Entity #1122 | Name: BRCT domain / Type: protein / Description: M. tb. LigA BRCT domain / Formula weight: 10.272 / Num. of mol.: 1 / Source: Mycobacterium tuberculosis / References: UniProt: P9WNV1 Sequence: VDERDESVPR TLAGLTIVVT GSLTGFSRDD AKEAIVARGG KAAGSVSKKT NYVVAGDSPG SKYDKAVELG VPILDEDGFR RLLADGPASR THHHHHH |
-Experimental information
Beam | Instrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.081 Å / Dist. spec. to detc.: 1.1 mm | |||||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm | |||||||||||||||||||||||||||||||||
Scan | Title: The complex formed between the class II apurinic/apyrimidinic-endonuclease/3'-5' exonuclease III (XthA) bound to the BRCT domain from Mycobacterium tuberculosis DNA ligase Measurement date: Mar 9, 2018 / Storage temperature: 10 °C / Cell temperature: 10 °C / Exposure time: 1 sec. / Number of frames: 10 / Unit: 1/nm /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 290 /
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Result | Type of curve: single_conc Comments: The ab initio model displayed in this entry represents the spatially aligned, volume and bead-occupancy-corrected (averaged) representation of the protein (DAMFILT). The displayed fit ...Comments: The ab initio model displayed in this entry represents the spatially aligned, volume and bead-occupancy-corrected (averaged) representation of the protein (DAMFILT). The displayed fit corresponds to an individual model fit to the SAXS data.
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