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- SASDAK2: Myo in PBS (Myoglobin) -

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Open data


ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDAK2
SampleMyo in PBS
  • Myoglobin (protein), Equus caballus
Function / homology
Function and homology information


Oxidoreductases; Acting on other nitrogenous compounds as donors / nitrite reductase activity / oxygen transport / sarcoplasm / Oxidoreductases; Acting on a peroxide as acceptor; Peroxidases / removal of superoxide radicals / oxygen carrier activity / peroxidase activity / oxygen binding / heme binding / metal ion binding
Similarity search - Function
Myoglobin / Globin / Globin / Globin domain profile. / Globin-like superfamily
Similarity search - Domain/homology
Biological speciesEquus caballus (horse)
Contact author
  • Darja Ruskule (EMBL-Hamburg, European Molecular Biology Laboratory (EMBL) - Hamburg outstation, Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #19
Type: atomic / Radius of dummy atoms: 1.90 A / Chi-square value: 0.835396
Search similar-shape structures of this assembly by Omokage search (details)
Model #20
Type: dummy / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 1.1025
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Myo in PBS / Ext coefficient: 8.18 / Contrast: 2.738 / Specific vol: 0.748 / Purity method: gel filtration / Dry vol: 20669 / Sample MW: 17 kDa / Specimen concentration: 25 mg/ml / Concentration method: nanodrop
BufferName: PBS / PK: 7 / pH: 7.4
Entity #15Type: protein / Description: Myoglobin / Formula weight: 17.08 / Num. of mol.: 1 / Source: Equus caballus / References: UniProt: P68082
Sequence:
MGLSDGEWQQ VLNVWGKVEA DIAGHGQEVL IRLFTGHPET LEKFDKFKHL KTEAEMKASE DLKKHGTVVL TALGGILKKK GHHEAELKPL AQSHATKHKI PIKYLEFISD AIIHVLHSKH PGDFGADAQG AMTKALELFR NDIAAKYKEL GFQG

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Experimental information

BeamInstrument name: DORIS III EMBL X33 / City: Hamburg / 国: Germany / Shape: 0.6 / Type of source: X-ray synchrotron / Wavelength: 0.15 Å / Dist. spec. to detc.: 2.7 mm
DetectorName: Pilatus 1M-W / Pixsize x: 0.172 mm
Scan
Title: Myo in PBS / Measurement date: Sep 20, 2012 / Storage temperature: 10 °C / Cell temperature: 10 °C / Exposure time: 15 sec. / Number of frames: 8 / Unit: 1/nm /
MinMax
Q0.0871 17.6902
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 1991 /
MinMax
Q0.248434 5.69191
P(R) point1 1991
R0 5
Result
Type of curve: merged / Standard: BSA /
ExperimentalStandardPorod
MW11 kDa11 kDa-
Volume--32 nm3

P(R)Guinier
Forward scattering, I010.7 10.6
Radius of gyration, Rg1.65 nm1.64 nm

MinMax
D-5
Guinier point96 260

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