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- SASDBY9: Immunoglobulin domains 3,4 of Nucleoporin Pom152 (Pom152 Ig-3,4: ... -

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Basic information

Entry
Database: SASBDB / ID: SASDBY9
SampleImmunoglobulin domains 3,4 of Nucleoporin Pom152 (Pom152 Ig-3,4: amino acids 603-820)
  • Nucleoporin POM152 (protein), Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Function / homology
Function and homology information


nuclear pore transmembrane ring / spindle pole body duplication / nuclear pore organization / structural constituent of nuclear pore / nucleocytoplasmic transport / nuclear envelope lumen / mRNA transport / nuclear pore / protein-membrane adaptor activity / nuclear periphery ...nuclear pore transmembrane ring / spindle pole body duplication / nuclear pore organization / structural constituent of nuclear pore / nucleocytoplasmic transport / nuclear envelope lumen / mRNA transport / nuclear pore / protein-membrane adaptor activity / nuclear periphery / cell periphery / protein import into nucleus / nuclear envelope / nuclear membrane / mitochondrion
Similarity search - Function
Biological speciesSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast)
CitationDate: 2017 Feb
Title: Molecular Architecture of the Major Membrane Ring Component of the Nuclear Pore Complex
Authors: Upla P / Kim S / Sampathkumar P / Dutta K / Cahill S / Chemmama I / Williams R / Bonanno J / Rice W / Stokes D / Cowburn D / Almo S / Sali A / Rout M
Contact author
  • Seung Joong Kim (University of California, San Francisco (UCSF))

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #1110
Type: dummy / Software: DAMMIN / Radius of dummy atoms: 2.25 A / Chi-square value: 2.017
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Immunoglobulin domains 3,4 of Nucleoporin Pom152 (Pom152 Ig-3,4: amino acids 603-820)
Specimen concentration: 0.50-11.90
BufferName: 10mM HEPES, 150mM NaCl, 10%(v/v) glycerol, 5mM DTT / pH: 7.5
Entity #577Type: protein / Description: Nucleoporin POM152 / Formula weight: 25.552 / Num. of mol.: 1
Source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
References: UniProt: P39685
Sequence: GKSNVLVTMP VAPTMEVKSF PILDQCVGQV GLNFELSFTG APPYYYNTKI YKLENGERKL YDAKRYTSEG TRNRFSYSPP KEGNYEIVFD TVSNKLFTEP IKLEPVKEYT FKTSMRVKPS ASLKLHHDLK LCLGDHSSVP VALKGQGPFT LTYDIIETFS SKRKTFEIKE ...Sequence:
GKSNVLVTMP VAPTMEVKSF PILDQCVGQV GLNFELSFTG APPYYYNTKI YKLENGERKL YDAKRYTSEG TRNRFSYSPP KEGNYEIVFD TVSNKLFTEP IKLEPVKEYT FKTSMRVKPS ASLKLHHDLK LCLGDHSSVP VALKGQGPFT LTYDIIETFS SKRKTFEIKE IKTNEYVIKT PVFTTGGDYI LSLVSIKDST GCVVGLSQPD AKIQVRRDEG HHHHHH

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Experimental information

BeamInstrument name: Stanford Synchrotron Radiation Lightsource (SSRL) BL4-2
City: Stanford, CA / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.098 Å / Dist. spec. to detc.: 1.7 mm
DetectorName: Rayonix MX225-HE
Scan
Title: Immunoglobulin domains 3,4 of Nucleoporin Pom152 (Pom152 Ig-3,4: amino acids 603-820)
Measurement date: Apr 12, 2015 / Storage temperature: 15 °C / Cell temperature: 15 °C / Exposure time: 1 sec. / Number of frames: 20 / Unit: 1/A /
MinMax
Q0.0096 0.3616
Distance distribution function P(R)
Sofotware P(R): GNOM 4.5a / Number of points: 386 /
MinMax
Q0.009617 0.3616
P(R) point1 386
R0 104.5
Result
Type of curve: single_conc
Comments: Guinier Rg and I(0) were calculated using AutoRg. The experimental MW was estimated using SAXSMOW.
ExperimentalStandardPorod
MW25.9 kDa25.2 kDa-
Volume--27.97 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I01550 1.71 1553.37 2.97
Radius of gyration, Rg2.976 nm0.005 2.95 nm0.11

MinMax
D-10.45
Guinier point3 23

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