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- SASDBZ8: Single stranded poly-deoxyadenosine DNA (30mer, dA30) in 100 mM NaCl -

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Basic information

Entry
Database: SASBDB / ID: SASDBZ8
SampleSingle stranded poly-deoxyadenosine DNA (30mer, dA30) in 100 mM NaCl
  • Poly-deoxyadenosine (30mer) (DNA), dA30
CitationDate: 2017 Feb 25
Title: The impact of base stacking on the conformations and electrostatics of single-stranded DNA
Authors: Plumridge A / Meisburger S / Andresen K
Contact author
  • Alex Plumridge (Cornell University, Ithaca, NY, United States)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #1010
Type: dummy / Software: Custom / Comment: State 1 / Chi-square value: 0.994009
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Model #1011
Type: dummy / Software: Custom / Comment: State 2 / Chi-square value: 0.994009
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Model #1012
Type: dummy / Software: Custom / Comment: State 3 / Chi-square value: 0.994009
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Model #1013
Type: dummy / Software: Custom / Comment: State 4 / Chi-square value: 0.994009
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Model #1014
Type: dummy / Software: Custom / Comment: State 5 / Chi-square value: 0.994009
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Model #1015
Type: dummy / Software: Custom / Comment: State 6 / Chi-square value: 0.994009
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Model #1016
Type: dummy / Software: Custom / Comment: State 7 / Chi-square value: 0.994009
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Model #1017
Type: dummy / Software: Custom / Comment: State 8 / Chi-square value: 0.994009
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Model #1018
Type: dummy / Software: Custom / Comment: State 9 / Chi-square value: 0.994009
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Model #1019
Type: dummy / Software: Custom / Comment: State 10 / Chi-square value: 0.994009
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Model #1020
Type: dummy / Software: Custom / Comment: State 11 / Chi-square value: 0.994009
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Model #1021
Type: dummy / Software: Custom / Comment: State 12 / Chi-square value: 0.994009
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Model #1022
Type: dummy / Software: Custom / Comment: State 13 / Chi-square value: 0.994009
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Model #1023
Type: dummy / Software: Custom / Comment: State 14 / Chi-square value: 0.994009
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Model #1025
Type: dummy / Software: Custom / Comment: State 15 / Chi-square value: 0.994009
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Model #1026
Type: dummy / Software: Custom / Comment: State 16 / Chi-square value: 0.994009
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Model #1027
Type: dummy / Software: Custom / Comment: State 17 / Chi-square value: 0.994009
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Model #1028
Type: dummy / Software: Custom / Comment: State 18 / Chi-square value: 0.994009
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Model #1030
Type: dummy / Software: Custom / Comment: State 19 / Chi-square value: 0.994009
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Model #1031
Type: dummy / Software: Custom / Comment: State 20 / Chi-square value: 0.994009
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Sample

SampleName: Single stranded poly-deoxyadenosine DNA (30mer, dA30) in 100 mM NaCl
Specimen concentration: 0.50-1.80
BufferName: 1mM Na MOPS, 100mM NaCl / pH: 7
Entity #401Name: dA30 / Type: DNA / Description: Poly-deoxyadenosine (30mer) / Formula weight: 9.3 / Num. of mol.: 1
Sequence:
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA

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Experimental information

BeamInstrument name: Cornell High Energy Synchrotron Source (CHESS) G1
City: Ithaca, NY / 国: USA / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.1 Å / Dist. spec. to detc.: 1.8 mm
DetectorName: Finger Lakes CCD / Type: CCD
Scan
Title: Single stranded poly-deoxyadenosine DNA (30mer, dA / Measurement date: Apr 1, 2015 / Storage temperature: 4 °C / Cell temperature: 22 °C / Exposure time: 10 sec. / Number of frames: 20 / Unit: 1/A /
MinMax
Q0.01 0.29
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 256 /
MinMax
Q0.012 0.267
P(R) point1 256
R0 94.52
Result
Type of curve: extrapolated /
ExperimentalPorod
MW10.1 kDa-
Volume-16.2 nm3

GuinierGuinier errorP(R)
Forward scattering, I051.03 0.49 -
Radius of gyration, Rg2.72 nm0.05 2.8 nm

MinMax
D-10
Guinier point11 36

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