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Yorodumi- PDB-8vdu: Crystal structure of hybrid insulin peptide (InsC8-15-IAPP74-80) ... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 8vdu | |||||||||
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| Title | Crystal structure of hybrid insulin peptide (InsC8-15-IAPP74-80) bound to HLA-DQ8 | |||||||||
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Keywords | IMMUNE SYSTEM / pMHC II complex | |||||||||
| Function / homology | Function and homology informationantigen processing and presentation of peptide or polysaccharide antigen via MHC class II / MHC class II protein complex / adaptive immune response / endosome membrane / lysosomal membrane Similarity search - Function | |||||||||
| Biological species | Homo sapiens (human) | |||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.5 Å | |||||||||
Authors | Tran, T.M. / Lim, J.J. / Loh, T.Y. / Mannering, I.S. / Rossjohn, J. / Reid, H.H. | |||||||||
| Funding support | Australia, 2items
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Citation | Journal: J.Biol.Chem. / Year: 2024Title: A structural basis of T cell cross-reactivity to native and spliced self-antigens presented by HLA-DQ8. Authors: Tran, M.T. / Lim, J.J. / Loh, T.J. / Mannering, S.I. / Rossjohn, J. / Reid, H.H. | |||||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 8vdu.cif.gz | 725.7 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb8vdu.ent.gz | 497 KB | Display | PDB format |
| PDBx/mmJSON format | 8vdu.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 8vdu_validation.pdf.gz | 787.9 KB | Display | wwPDB validaton report |
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| Full document | 8vdu_full_validation.pdf.gz | 801.5 KB | Display | |
| Data in XML | 8vdu_validation.xml.gz | 52.3 KB | Display | |
| Data in CIF | 8vdu_validation.cif.gz | 70.5 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/vd/8vdu ftp://data.pdbj.org/pub/pdb/validation_reports/vd/8vdu | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 8vcxC ![]() 8vcyC ![]() 8vd0C ![]() 8vd2C ![]() 8vddC C: citing same article ( |
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| Similar structure data | Similarity search - Function & homology F&H Search |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
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About Yorodumi



Homo sapiens (human)
X-RAY DIFFRACTION
Australia, 2items
Citation




PDBj



