- PDB-8j0r: Structure of human TFAP2A in complex with DNA -
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基本情報
登録情報
データベース: PDB / ID: 8j0r
タイトル
Structure of human TFAP2A in complex with DNA
要素
DNA (5'-D(*CP*TP*GP*CP*CP*TP*CP*AP*GP*GP*CP*AP*C)-3')
DNA (5'-D(*GP*TP*GP*CP*CP*TP*GP*AP*GP*GP*CP*AP*G)-3')
Transcription factor AP-2-alpha
キーワード
DNA BINDING PROTEIN/DNA / TFAP2 family / DNA BINDING PROTEIN-DNA complex
機能・相同性
機能・相同性情報
optic vesicle morphogenesis / optic cup structural organization / oculomotor nerve formation / positive regulation of tooth mineralization / nuclear receptor corepressor activity / trigeminal nerve development / TFAP2 (AP-2) family regulates transcription of other transcription factors / TFAP2A acts as a transcriptional repressor during retinoic acid induced cell differentiation / retina layer formation / Specification of the neural plate border ...optic vesicle morphogenesis / optic cup structural organization / oculomotor nerve formation / positive regulation of tooth mineralization / nuclear receptor corepressor activity / trigeminal nerve development / TFAP2 (AP-2) family regulates transcription of other transcription factors / TFAP2A acts as a transcriptional repressor during retinoic acid induced cell differentiation / retina layer formation / Specification of the neural plate border / TFAP2 (AP-2) family regulates transcription of cell cycle factors / Negative regulation of activity of TFAP2 (AP-2) family transcription factors / Transcriptional regulation by the AP-2 (TFAP2) family of transcription factors / negative regulation of transcription by competitive promoter binding / embryonic cranial skeleton morphogenesis / Activation of the TFAP2 (AP-2) family of transcription factors / bone morphogenesis / embryonic forelimb morphogenesis / inner ear morphogenesis / regulation of cell differentiation / roof of mouth development / eyelid development in camera-type eye / SUMOylation of transcription factors / negative regulation of reactive oxygen species metabolic process / positive regulation of bone mineralization / TFAP2 (AP-2) family regulates transcription of growth factors and their receptors / kidney development / cellular response to iron ion / RNA polymerase II transcription regulatory region sequence-specific DNA binding / sensory perception of sound / DNA-binding transcription repressor activity, RNA polymerase II-specific / positive regulation of neuron apoptotic process / sequence-specific double-stranded DNA binding / regulation of cell population proliferation / DNA-binding transcription activator activity, RNA polymerase II-specific / sequence-specific DNA binding / transcription cis-regulatory region binding / DNA-binding transcription factor activity, RNA polymerase II-specific / RNA polymerase II cis-regulatory region sequence-specific DNA binding / negative regulation of cell population proliferation / negative regulation of DNA-templated transcription / chromatin binding / positive regulation of gene expression / negative regulation of apoptotic process / chromatin / regulation of transcription by RNA polymerase II / positive regulation of DNA-templated transcription / negative regulation of transcription by RNA polymerase II / positive regulation of transcription by RNA polymerase II / DNA binding / nucleoplasm / identical protein binding / nucleus 類似検索 - 分子機能
構造決定の手法: 分子置換 / 解像度: 2.1→19.99 Å / Cor.coef. Fo:Fc: 0.965 / Cor.coef. Fo:Fc free: 0.952 / SU B: 2.972 / SU ML: 0.079 / 交差検証法: THROUGHOUT / ESU R: 0.127 / ESU R Free: 0.123 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
反射数
%反射
Selection details
Rfree
0.19411
2688
5.3 %
RANDOM
Rwork
0.16213
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-
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obs
0.1638
48346
99.8 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK