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Yorodumi- PDB-8gch: GAMMA-CHYMOTRYPSIN IS A COMPLEX OF ALPHA-CHYMOTRYPSIN WITH ITS OW... -
+Open data
-Basic information
Entry | Database: PDB / ID: 8gch | ||||||
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Title | GAMMA-CHYMOTRYPSIN IS A COMPLEX OF ALPHA-CHYMOTRYPSIN WITH ITS OWN AUTOLYSIS PRODUCTS | ||||||
Components |
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Keywords | HYDROLASE/PEPTIDE / HYDROLASE / SERINE PROTEINASE / HYDROLASE-PEPTIDE COMPLEX | ||||||
Function / homology | Function and homology information chymotrypsin / serpin family protein binding / serine protease inhibitor complex / digestion / serine-type endopeptidase activity / proteolysis / extracellular region Similarity search - Function | ||||||
Biological species | Bos taurus (cattle) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.6 Å | ||||||
Authors | Harel, M. / Sussman, J.L. / Silman, I. | ||||||
Citation | Journal: Biochemistry / Year: 1991 Title: Gamma-chymotrypsin is a complex of alpha-chymotrypsin with its own autolysis products. Authors: Harel, M. / Su, C.T. / Frolow, F. / Silman, I. / Sussman, J.L. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 8gch.cif.gz | 66 KB | Display | PDBx/mmCIF format |
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PDB format | pdb8gch.ent.gz | 48.3 KB | Display | PDB format |
PDBx/mmJSON format | 8gch.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 8gch_validation.pdf.gz | 398.3 KB | Display | wwPDB validaton report |
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Full document | 8gch_full_validation.pdf.gz | 403 KB | Display | |
Data in XML | 8gch_validation.xml.gz | 7.3 KB | Display | |
Data in CIF | 8gch_validation.cif.gz | 12.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/gc/8gch ftp://data.pdbj.org/pub/pdb/validation_reports/gc/8gch | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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2 |
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3 |
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Unit cell |
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Atom site foot note | 1: SEE REMARK 6. |
-Components
-GAMMA-CHYMOTRYPSIN ... , 3 types, 3 molecules EFG
#1: Protein/peptide | Mass: 1253.511 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) / References: UniProt: P00766, chymotrypsin |
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#2: Protein | Mass: 13934.556 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) / References: UniProt: P00766, chymotrypsin |
#3: Protein | Mass: 10074.495 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) / References: UniProt: P00766, chymotrypsin |
-Protein/peptide , 1 types, 1 molecules C
#4: Protein/peptide | Mass: 332.355 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) |
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-Non-polymers , 2 types, 350 molecules
#5: Chemical | ChemComp-SO4 / #6: Water | ChemComp-HOH / | |
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-Details
Compound details | REPRESENTED BY CHAINS E, F AND G, THE GAMMA CHYMOTRYPSIN MOLECULE IS COMPRISED OF THREE POLYPEPTIDE ...REPRESENTE |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.22 Å3/Da / Density % sol: 44.47 % | |||||||||||||||
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Crystal grow | *PLUS pH: 5.5 / Method: unknown / Details: Cohen, G.H., (1981) J. Mol. Biol., 148, 449. | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.6 Å / Num. obs: 29204 / Num. measured all: 33900 / Rmerge(I) obs: 0.024 |
-Processing
Refinement | Highest resolution: 1.6 Å Details: 8GCH RESIDUES GLY 250, ALA 251, AND TRP 252 FORM THE TRIPEPTIDE 8GCH SEEN IN THE ACTIVE SITE. THE TRIPEPTIDE SEQUENCE IS 8GCH DERIVED FROM THE DENSITY SEEN IN THE MAP AND IS REALLY 8GCH THE ...Details: 8GCH RESIDUES GLY 250, ALA 251, AND TRP 252 FORM THE TRIPEPTIDE 8GCH SEEN IN THE ACTIVE SITE. THE TRIPEPTIDE SEQUENCE IS 8GCH DERIVED FROM THE DENSITY SEEN IN THE MAP AND IS REALLY 8GCH THE RESULT OF AN OVERLAP OF DIFFERENT AUTOLYSED 8GCH POLYPEPTIDES BOUND THERE. 8GCH | |||||||||||||||
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Refinement step | Cycle: LAST / Highest resolution: 1.6 Å
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Refinement | *PLUS Highest resolution: 1.6 Å / Lowest resolution: 6 Å / σ(I): 1 / Num. reflection obs: 25266 / Rfactor obs: 0.193 | |||||||||||||||
Solvent computation | *PLUS | |||||||||||||||
Displacement parameters | *PLUS | |||||||||||||||
Refine LS restraints | *PLUS
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