[English] 日本語
![](img/lk-miru.gif)
- PDB-8cqq: Crystal structure of an 8-repeat consensus TPR superhelix with Copper -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 8cqq | ||||||
---|---|---|---|---|---|---|---|
Title | Crystal structure of an 8-repeat consensus TPR superhelix with Copper | ||||||
![]() | Consensus tetratricopeptide repeat protein | ||||||
![]() | DE NOVO PROTEIN / CTPR / polymorphism / metal coordination. | ||||||
Function / homology | COPPER (II) ION![]() | ||||||
Biological species | synthetic construct (others) | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Liutkus, M. / Rojas, A.L. / Cortajarena, A.L. | ||||||
Funding support | European Union, 1items
| ||||||
![]() | ![]() Title: Diverse crystalline protein scaffolds through metal-dependent polymorphism. Authors: Liutkus, M. / Sasselli, I.R. / Rojas, A.L. / Cortajarena, A.L. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 70.1 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 50.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.3 MB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 1.3 MB | Display | |
Data in XML | ![]() | 11.3 KB | Display | |
Data in CIF | ![]() | 14.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8bu0C ![]() 8ch0C ![]() 8chyC ![]() 8cigC ![]() 8ckrC ![]() 8cmqC ![]() 8cp8C ![]() 8cqpC ![]() 8ot7C C: citing same article ( |
---|---|
Similar structure data | Similarity search - Function & homology ![]() |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-
Components
#1: Protein | Mass: 34186.594 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) synthetic construct (others) / Production host: ![]() ![]() | ||||||
---|---|---|---|---|---|---|---|
#2: Chemical | #3: Chemical | ChemComp-SO4 / #4: Water | ChemComp-HOH / | Has ligand of interest | Y | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 3.84 Å3/Da / Density % sol: 67.93 % |
---|---|
Crystal grow | Temperature: 292 K / Method: vapor diffusion, hanging drop / pH: 5.5 / Details: 10 mM CuSO4 100 mM NaOAc 30% MPD |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Dec 8, 2019 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.37323 Å / Relative weight: 1 |
Reflection | Resolution: 2.6→45.77 Å / Num. obs: 14716 / % possible obs: 94.1 % / Redundancy: 2.7 % / CC1/2: 0.959 / Rmerge(I) obs: 0.137 / Rpim(I) all: 0.107 / Rrim(I) all: 0.185 / Net I/σ(I): 5.3 / Num. measured all: 39734 |
Reflection shell | Resolution: 2.6→2.74 Å / % possible obs: 92.3 % / Redundancy: 2.7 % / Rmerge(I) obs: 0.548 / Num. measured all: 5632 / Num. unique obs: 2115 / CC1/2: 0.546 / Rpim(I) all: 0.432 / Rrim(I) all: 0.751 / Net I/σ(I) obs: 2.5 |
-
Processing
Software |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure: ![]()
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 48.493 Å2
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: 1 / Resolution: 2.6→45.77 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
|