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- PDB-8cqp: Crystal structure of an 8-repeat consensus TPR superhelix with Ca... -
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Open data
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Basic information
Entry | Database: PDB / ID: 8cqp | ||||||
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Title | Crystal structure of an 8-repeat consensus TPR superhelix with Calcium (low concentration) | ||||||
![]() | Monomer | ||||||
![]() | DE NOVO PROTEIN / CTPR / polymorphism / metal coordination. | ||||||
Function / homology | ACETATE ION![]() | ||||||
Biological species | synthetic construct (others) | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Liutkus, M. / Rojas, A.L. / Cortajarena, A.L. | ||||||
Funding support | European Union, 1items
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![]() | ![]() Title: Diverse crystalline protein scaffolds through metal-dependent polymorphism. Authors: Liutkus, M. / Sasselli, I.R. / Rojas, A.L. / Cortajarena, A.L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 106.7 KB | Display | ![]() |
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PDB format | ![]() | 78.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.3 MB | Display | ![]() |
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Full document | ![]() | 1.3 MB | Display | |
Data in XML | ![]() | 17.2 KB | Display | |
Data in CIF | ![]() | 24.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8bu0C ![]() 8ch0C ![]() 8chyC ![]() 8cigC ![]() 8ckrC ![]() 8cmqC ![]() 8cp8C ![]() 8cqqC ![]() 8ot7C C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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3 | ![]()
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Unit cell |
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Components
-Protein , 1 types, 3 molecules ABC
#1: Protein | Mass: 34186.594 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Source: (gene. exp.) synthetic construct (others) / Production host: ![]() ![]() |
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-Non-polymers , 5 types, 111 molecules ![](data/chem/img/MPD.gif)
![](data/chem/img/ACT.gif)
![](data/chem/img/CL.gif)
![](data/chem/img/CA.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/ACT.gif)
![](data/chem/img/CL.gif)
![](data/chem/img/CA.gif)
![](data/chem/img/HOH.gif)
#2: Chemical | #3: Chemical | ChemComp-ACT / #4: Chemical | ChemComp-CL / #5: Chemical | #6: Water | ChemComp-HOH / | |
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-Details
Has ligand of interest | Y |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal grow | Temperature: 292 K / Method: vapor diffusion, hanging drop / pH: 5.5 / Details: CaCl2, 10 mM 100 mM NaOAc, pH 5.5 30% MPD |
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-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Feb 2, 2018 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97926 Å / Relative weight: 1 |
Reflection | Resolution: 1.7→70.25 Å / Num. obs: 53530 / % possible obs: 99.9 % / Redundancy: 5.8 % / CC1/2: 0.995 / Rpim(I) all: 0.041 / Rrim(I) all: 0.101 / Net I/σ(I): 7.9 / Num. measured all: 310018 |
Reflection shell | Resolution: 1.7→1.79 Å / % possible obs: 100 % / Redundancy: 5.8 % / Num. measured all: 44469 / Num. unique obs: 7724 / CC1/2: 0.477 / Rpim(I) all: 0.571 / Rrim(I) all: 1.392 / Net I/σ(I) obs: 1.4 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 40.298 Å2
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Refinement step | Cycle: 1 / Resolution: 1.7→57.97 Å
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Refine LS restraints |
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