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- PDB-8cmq: Crystal structure of an 8-repeat consensus TPR superhelix with Tb -
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Open data
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Basic information
Entry | Database: PDB / ID: 8cmq | ||||||
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Title | Crystal structure of an 8-repeat consensus TPR superhelix with Tb | ||||||
![]() | Consensus tetratricopeptide repeat protein | ||||||
![]() | DE NOVO PROTEIN / CTPR / polymorphism / metal coordination. | ||||||
Function / homology | TERBIUM(III) ION![]() | ||||||
Biological species | synthetic construct (others) | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Liutkus, M. / Rojas, A.L. / Cortajarena, A.L. | ||||||
Funding support | European Union, 1items
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![]() | ![]() Title: Diverse crystalline protein scaffolds through metal-dependent polymorphism. Authors: Liutkus, M. / Sasselli, I.R. / Rojas, A.L. / Cortajarena, A.L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 49.3 KB | Display | ![]() |
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PDB format | ![]() | 31.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 2.1 MB | Display | ![]() |
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Full document | ![]() | 2.1 MB | Display | |
Data in XML | ![]() | 4.8 KB | Display | |
Data in CIF | ![]() | 6.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8bu0C ![]() 8ch0C ![]() 8chyC ![]() 8cigC ![]() 8ckrC ![]() 8cp8C ![]() 8cqpC ![]() 8cqqC ![]() 8ot7C C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 34186.594 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) synthetic construct (others) / Production host: ![]() ![]() | ||||||
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#2: Chemical | ChemComp-MPD / ( | ||||||
#3: Chemical | #4: Chemical | #5: Water | ChemComp-HOH / | Has ligand of interest | Y | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal grow | Temperature: 292 K / Method: vapor diffusion / pH: 8 / Details: TbCl3, 5 mM 100 mM Tris-HCl 30% MPD |
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-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Oct 16, 2020 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.650042 Å / Relative weight: 1 |
Reflection | Resolution: 1.782→45.913 Å / Num. obs: 18929 / % possible obs: 99.5 % / Redundancy: 11.9 % / CC1/2: 0.993 / Rmerge(I) obs: 0.152 / Rpim(I) all: 0.046 / Rrim(I) all: 0.159 / Net I/σ(I): 13.1 |
Reflection shell | Resolution: 1.782→1.812 Å / Redundancy: 10.5 % / Rmerge(I) obs: 1.72 / Mean I/σ(I) obs: 1.9 / Num. unique obs: 926 / CC1/2: 0.628 / Rpim(I) all: 0.55 / Rrim(I) all: 1.808 / % possible all: 97.6 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 34.466 Å2
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Refinement step | Cycle: 1 / Resolution: 1.782→45.91 Å
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Refine LS restraints |
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