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- PDB-8aer: Malonyl-CoA reductase from Chloroflexus aurantiacus - C-terminal ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 8aer | ||||||||||||
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Title | Malonyl-CoA reductase from Chloroflexus aurantiacus - C-terminal Y731A variant | ||||||||||||
![]() | Short-chain dehydrogenase/reductase SDR | ||||||||||||
![]() | OXIDOREDUCTASE / Rossmann fold / site-directed mutagenesis / bi-functional enzyme / reductase / malonyl-CoA / 3-hydroxypropionate / 3-HP cycle | ||||||||||||
Function / homology | fatty acid elongation / oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor / short chain dehydrogenase / Short-chain dehydrogenase/reductase SDR / NAD(P)-binding domain superfamily / nucleotide binding / metal ion binding / Short-chain dehydrogenase/reductase SDR![]() | ||||||||||||
Biological species | ![]() ![]() | ||||||||||||
Method | ![]() ![]() ![]() | ||||||||||||
![]() | Kabasakal, B.V. / Murray, J.W. | ||||||||||||
Funding support | ![]()
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![]() | ![]() Title: Dynamic lid domain of Chloroflexus aurantiacus Malonyl-CoA reductase controls the reaction. Authors: Kabasakal, B.V. / Cotton, C.A.R. / Murray, J.W. #1: ![]() Title: Dynamic lid domain of Chloroflexus aurantiacus Malonyl-CoA Reductase controls the reaction Authors: Kabasakal, B.V. / Cotton, C.A.R. / Murray, J.W. | ||||||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 268.1 KB | Display | ![]() |
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PDB format | ![]() | 211.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 434 KB | Display | ![]() |
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Full document | ![]() | 441.4 KB | Display | |
Data in XML | ![]() | 27.5 KB | Display | |
Data in CIF | ![]() | 41 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8a30SC ![]() 8a7sC ![]() 8a8tC ![]() 8aeoC ![]() 8aeqC ![]() 8aetC ![]() 8aewC S: Starting model for refinement C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 73229.359 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Strain: ATCC 29366 / DSM 635 / J-10-fl / Gene: Caur_2614 / Production host: ![]() ![]() | ||||
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#2: Chemical | #3: Water | ChemComp-HOH / | Has ligand of interest | N | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.12 Å3/Da / Density % sol: 60.54 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 7.4 Details: 0.1 M Sodium citrate tribasic dihydrate, 1 M Ammonium phosphate |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Oct 1, 2016 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97625 Å / Relative weight: 1 |
Reflection | Resolution: 1.77→48 Å / Num. obs: 156726 / % possible obs: 96.2 % / Redundancy: 1.9 % / Biso Wilson estimate: 34.2 Å2 / CC1/2: 0.997 / CC star: 0.999 / Rmerge(I) obs: 0.04429 / Rpim(I) all: 0.0449 / Rrim(I) all: 0.06263 / Net I/σ(I): 9.44 |
Reflection shell | Resolution: 1.77→1.833 Å / Redundancy: 1.9 % / Rmerge(I) obs: 0.3991 / Mean I/σ(I) obs: 1.53 / Num. unique obs: 15751 / CC1/2: 0.665 / CC star: 0.894 / Rrim(I) all: 0.5644 / Rsym value: 0.3991 / % possible all: 97.09 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 8A30 Resolution: 1.77→48 Å / SU ML: 0.2 / Cross valid method: FREE R-VALUE / σ(F): 1.35 / Phase error: 20.32 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.77→48 Å
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Refine LS restraints |
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LS refinement shell |
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Refinement TLS params. | Method: refined / Refine-ID: X-RAY DIFFRACTION
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Refinement TLS group |
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