+
Open data
-
Basic information
| Entry | Database: PDB / ID: 7ux5 | ||||||
|---|---|---|---|---|---|---|---|
| Title | Structure of PDL1 in complex with FP28136, a Helicon Polypeptide | ||||||
Components |
| ||||||
Keywords | IMMUNE SYSTEM / Complex / stapled | ||||||
| Function / homology | Function and homology informationnegative regulation of tumor necrosis factor superfamily cytokine production / positive regulation of activated CD8-positive, alpha-beta T cell apoptotic process / negative regulation of CD8-positive, alpha-beta T cell activation / negative regulation of T cell mediated immune response to tumor cell / TRIF-dependent toll-like receptor signaling pathway / negative regulation of CD4-positive, alpha-beta T cell proliferation / STAT3 nuclear events downstream of ALK signaling / negative regulation of interleukin-10 production / negative regulation of activated T cell proliferation / negative regulation of type II interferon production ...negative regulation of tumor necrosis factor superfamily cytokine production / positive regulation of activated CD8-positive, alpha-beta T cell apoptotic process / negative regulation of CD8-positive, alpha-beta T cell activation / negative regulation of T cell mediated immune response to tumor cell / TRIF-dependent toll-like receptor signaling pathway / negative regulation of CD4-positive, alpha-beta T cell proliferation / STAT3 nuclear events downstream of ALK signaling / negative regulation of interleukin-10 production / negative regulation of activated T cell proliferation / negative regulation of type II interferon production / positive regulation of interleukin-10 production / Co-inhibition by PD-1 / negative regulation of T cell proliferation / T cell costimulation / response to cytokine / positive regulation of T cell proliferation / recycling endosome membrane / actin cytoskeleton / cellular response to lipopolysaccharide / early endosome membrane / adaptive immune response / transcription coactivator activity / cell surface receptor signaling pathway / immune response / receptor ligand activity / external side of plasma membrane / signal transduction / extracellular exosome / nucleoplasm / plasma membrane Similarity search - Function | ||||||
| Biological species | Homo sapiens (human)synthetic construct (others) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.35 Å | ||||||
Authors | Agarwal, S. / Li, K. / Tokareva, O. / Thomson, T. / Travaline, T. / Wahl, S. / Verdine, G. / McGee, J. | ||||||
| Funding support | United States, 1items
| ||||||
Citation | Journal: Proc.Natl.Acad.Sci.USA / Year: 2022Title: De novo mapping of alpha-helix recognition sites on protein surfaces using unbiased libraries. Authors: Li, K. / Tokareva, O.S. / Thomson, T.M. / Wahl, S.C.T. / Travaline, T.L. / Ramirez, J.D. / Choudary, S.K. / Agarwal, S. / Walkup 4th, W.G. / Olsen, T.J. / Brennan, M.J. / Verdine, G.L. / McGee, J.H. | ||||||
| History |
|
-
Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
|---|
-
Downloads & links
-
Download
| PDBx/mmCIF format | 7ux5.cif.gz | 390.2 KB | Display | PDBx/mmCIF format |
|---|---|---|---|---|
| PDB format | pdb7ux5.ent.gz | 284.9 KB | Display | PDB format |
| PDBx/mmJSON format | 7ux5.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 7ux5_validation.pdf.gz | 1.4 MB | Display | wwPDB validaton report |
|---|---|---|---|---|
| Full document | 7ux5_full_validation.pdf.gz | 1.4 MB | Display | |
| Data in XML | 7ux5_validation.xml.gz | 30.5 KB | Display | |
| Data in CIF | 7ux5_validation.cif.gz | 39.9 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ux/7ux5 ftp://data.pdbj.org/pub/pdb/validation_reports/ux/7ux5 | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 7uwiC ![]() 7uwoC ![]() 7uxiC ![]() 7uxjC ![]() 7uxkC ![]() 7uxmC ![]() 7uxnC ![]() 7uxoC ![]() 7uxpC ![]() 7uxqC ![]() 7uy2C ![]() 7uyjC ![]() 7uykC ![]() 5c3tS C: citing same article ( S: Starting model for refinement |
|---|---|
| Similar structure data | Similarity search - Function & homology F&H Search |
-
Links
-
Assembly
| Deposited unit | ![]()
| |||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ![]()
| |||||||||||||||||||||||||||||
| 2 | ![]()
| |||||||||||||||||||||||||||||
| 3 | ![]()
| |||||||||||||||||||||||||||||
| 4 | ![]()
| |||||||||||||||||||||||||||||
| 5 | ![]()
| |||||||||||||||||||||||||||||
| 6 | ![]()
| |||||||||||||||||||||||||||||
| Unit cell |
| |||||||||||||||||||||||||||||
| Noncrystallographic symmetry (NCS) | NCS domain:
|
Movie
Controller
Components
About Yorodumi




Homo sapiens (human)
X-RAY DIFFRACTION
United States, 1items
Citation













PDBj















