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Yorodumi- PDB-7pl0: Crystal structure of a DyP-type peroxidase 5G5 variant from Bacil... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 7pl0 | ||||||||||||
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| Title | Crystal structure of a DyP-type peroxidase 5G5 variant from Bacillus subtilis | ||||||||||||
Components | Deferrochelatase/peroxidase | ||||||||||||
Keywords | OXIDOREDUCTASE / Dye-decolorizing Peroxidase / Bacillus subtilis / Directed evolution / high-throughput screening / phenolic compounds | ||||||||||||
| Function / homology | Function and homology informationiron import into cell / Oxidoreductases; Acting on a peroxide as acceptor; Peroxidases / peroxidase activity / heme binding / metal ion binding Similarity search - Function | ||||||||||||
| Biological species | ![]() | ||||||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.1 Å | ||||||||||||
Authors | Borges, P.T. / Rodrigues, C. / Silva, D. / Taborda, A. / Brissos, V. / Frazao, C. / Martins, L.O. | ||||||||||||
| Funding support | United Kingdom, 3items
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Citation | Journal: Int J Mol Sci / Year: 2021Title: Loops around the Heme Pocket Have a Critical Role in the Function and Stability of Bs DyP from Bacillus subtilis . Authors: Rodrigues, C.F. / Borges, P.T. / Scocozza, M.F. / Silva, D. / Taborda, A. / Brissos, V. / Frazao, C. / Martins, L.O. | ||||||||||||
| History |
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 7pl0.cif.gz | 570 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb7pl0.ent.gz | 472.7 KB | Display | PDB format |
| PDBx/mmJSON format | 7pl0.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 7pl0_validation.pdf.gz | 2 MB | Display | wwPDB validaton report |
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| Full document | 7pl0_full_validation.pdf.gz | 2 MB | Display | |
| Data in XML | 7pl0_validation.xml.gz | 57.3 KB | Display | |
| Data in CIF | 7pl0_validation.cif.gz | 81.1 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/pl/7pl0 ftp://data.pdbj.org/pub/pdb/validation_reports/pl/7pl0 | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 7pkxSC S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| 2 | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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About Yorodumi




X-RAY DIFFRACTION
United Kingdom, 3items
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