- PDB-7p0b: Human mitochondrial Lon protease without substrate -
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基本情報
登録情報
データベース: PDB / ID: 7p0b
タイトル
Human mitochondrial Lon protease without substrate
要素
Lon protease homolog, mitochondrial
キーワード
HYDROLASE / Protease / Mitochondria / AAA+
機能・相同性
機能・相同性情報
oxidation-dependent protein catabolic process / PH domain binding / mitochondrial protein catabolic process / G-quadruplex DNA binding / endopeptidase La / mitochondrial DNA metabolic process / mitochondrial genome maintenance / ATP-dependent peptidase activity / protein quality control for misfolded or incompletely synthesized proteins / mitochondrial nucleoid ...oxidation-dependent protein catabolic process / PH domain binding / mitochondrial protein catabolic process / G-quadruplex DNA binding / endopeptidase La / mitochondrial DNA metabolic process / mitochondrial genome maintenance / ATP-dependent peptidase activity / protein quality control for misfolded or incompletely synthesized proteins / mitochondrial nucleoid / regulation of peptidyl-tyrosine phosphorylation / insulin receptor substrate binding / chaperone-mediated protein complex assembly / DNA polymerase binding / negative regulation of insulin receptor signaling pathway / mitochondrion organization / proteolysis involved in protein catabolic process / Mitochondrial protein degradation / protein catabolic process / ADP binding / single-stranded DNA binding / cellular response to oxidative stress / sequence-specific DNA binding / single-stranded RNA binding / response to hypoxia / mitochondrial matrix / serine-type endopeptidase activity / ATP hydrolysis activity / mitochondrion / nucleoplasm / ATP binding / identical protein binding / membrane / cytosol 類似検索 - 分子機能
Lon protease homologue, chloroplastic/mitochondrial / Lon protease, bacterial/eukaryotic-type / Peptidase S16, active site / ATP-dependent serine proteases, lon family, serine active site. / Lon proteolytic domain profile. / Peptidase S16, Lon proteolytic domain / Lon protease / Lon protease (S16) C-terminal proteolytic domain / Lon protease, N-terminal domain superfamily / Lon N-terminal domain profile. ...Lon protease homologue, chloroplastic/mitochondrial / Lon protease, bacterial/eukaryotic-type / Peptidase S16, active site / ATP-dependent serine proteases, lon family, serine active site. / Lon proteolytic domain profile. / Peptidase S16, Lon proteolytic domain / Lon protease / Lon protease (S16) C-terminal proteolytic domain / Lon protease, N-terminal domain superfamily / Lon N-terminal domain profile. / Lon protease, N-terminal domain / ATP-dependent protease La (LON) substrate-binding domain / Found in ATP-dependent protease La (LON) / PUA-like superfamily / ATPase family associated with various cellular activities (AAA) / ATPase, AAA-type, core / Ribosomal protein S5 domain 2-type fold, subgroup / Ribosomal protein S5 domain 2-type fold / ATPases associated with a variety of cellular activities / AAA+ ATPase domain / P-loop containing nucleoside triphosphate hydrolase 類似検索 - ドメイン・相同性
PDB chain-ID: A / Accession code: 3M6A / Source name: PDB / タイプ: experimental model
精密化
解像度: 4.11→4.11 Å / Cor.coef. Fo:Fc: 0.951 / WRfactor Rwork: 0.287 / SU B: 54.458 / SU ML: 0.651 / Average fsc overall: 0.7665 / Average fsc work: 0.7665 / 詳細: Hydrogens have not been used
Rfactor
反射数
%反射
Rwork
0.2869
70778
-
all
0.287
-
-
Rfree
-
-
0 %
obs
-
-
99.944 %
溶媒の処理
溶媒モデル: BABINET MODEL
原子変位パラメータ
Biso mean: 260.869 Å2
Baniso -1
Baniso -2
Baniso -3
1-
-4.364 Å2
3.115 Å2
1.674 Å2
2-
-
2.721 Å2
7.294 Å2
3-
-
-
1.643 Å2
拘束条件
Refine-ID
タイプ
Dev ideal
Dev ideal target
数
ELECTRONMICROSCOPY
r_bond_refined_d
0.004
0.012
25506
ELECTRONMICROSCOPY
r_angle_refined_deg
1.199
1.637
34541
ELECTRONMICROSCOPY
r_dihedral_angle_1_deg
6.367
5
3172
ELECTRONMICROSCOPY
r_dihedral_angle_2_deg
30.568
22.328
1267
ELECTRONMICROSCOPY
r_dihedral_angle_3_deg
16.892
15
4553
ELECTRONMICROSCOPY
r_dihedral_angle_4_deg
18.462
15
168
ELECTRONMICROSCOPY
r_chiral_restr
0.096
0.2
3334
ELECTRONMICROSCOPY
r_gen_planes_refined
0.004
0.02
18958
ELECTRONMICROSCOPY
r_nbd_refined
0.183
0.2
24702
ELECTRONMICROSCOPY
r_nbtor_refined
0.283
0.2
35732
ELECTRONMICROSCOPY
r_xyhbond_nbd_refined
0.139
0.2
1460
ELECTRONMICROSCOPY
r_mcbond_it
15.105
25.116
12727
ELECTRONMICROSCOPY
r_mcangle_it
25.99
37.633
15886
ELECTRONMICROSCOPY
r_scbond_it
17.29
26.939
12779
ELECTRONMICROSCOPY
r_scangle_it
29.678
39.806
18655
ELECTRONMICROSCOPY
r_lrange_it
52.889
484.465
104669
LS精密化 シェル
Refine-ID: ELECTRON MICROSCOPY / Num. reflection Rfree: _ / Total num. of bins used: 20 / % reflection obs: 100 %