+Open data
-Basic information
Entry | Database: PDB / ID: 7ox6 | ||||||
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Title | Solution structure of human interleukin-9 | ||||||
Components | Interleukin-9Interleukin 9 | ||||||
Keywords | CYTOKINE / four-helical bundle / IL-9 | ||||||
Function / homology | Function and homology information interleukin-9 receptor binding / Interleukin-9 signaling / positive regulation of interleukin-5 production / regulation of receptor signaling pathway via JAK-STAT / B cell proliferation / immunoglobulin mediated immune response / regulation of peptidyl-tyrosine phosphorylation / B cell differentiation / cytokine activity / growth factor activity ...interleukin-9 receptor binding / Interleukin-9 signaling / positive regulation of interleukin-5 production / regulation of receptor signaling pathway via JAK-STAT / B cell proliferation / immunoglobulin mediated immune response / regulation of peptidyl-tyrosine phosphorylation / B cell differentiation / cytokine activity / growth factor activity / positive regulation of cell growth / inflammatory response / positive regulation of cell population proliferation / extracellular space / extracellular region Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Savvides, S.N. / Tripsianes, K. / De Vos, T. / Papageorgiou, A. / Evangelidis, T. | ||||||
Citation | Journal: Biorxiv / Year: 2022 Title: Structural basis for the mechanism and antagonism of receptor signaling mediated by Interleukin-9 (IL-9) Authors: De Vos, T. / Godar, M. / Bick, F. / Papageorgiou, A.C. / Evangelidis, T. / Markovic, I. / Mortier, E. / Dumoutier, L. / Tripsianes, K. / Blanchetot, C. / Savvides, S.N. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7ox6.cif.gz | 767.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7ox6.ent.gz | 643.6 KB | Display | PDB format |
PDBx/mmJSON format | 7ox6.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ox/7ox6 ftp://data.pdbj.org/pub/pdb/validation_reports/ox/7ox6 | HTTPS FTP |
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-Related structure data
Related structure data | 7ox1C 7ox2C 7ox3C 7ox4C 7ox5C C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 14551.010 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: IL9 / Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: P15248 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution Contents: 60 mg/mL [U-13C; U-15N] Interleukin-9, 90% H2O/10% D2O Label: hIL-9 / Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 60 mg/mL / Component: Interleukin-9 / Isotopic labeling: [U-13C; U-15N] |
Sample conditions | Ionic strength: 100 mM / Label: Buffer_1 / pH: 6.5 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III / Manufacturer: Bruker / Model: AVANCE III / Field strength: 850 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | |||||||||||||||
NMR representative | Selection criteria: closest to the average | |||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 20 |