+
Open data
-
Basic information
Entry | Database: PDB / ID: 7om9 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Title | Thosea asigna virus RdRP domain | |||||||||
![]() | RNA-dependent RNA polymerase![]() | |||||||||
![]() | ![]() ![]() ![]() | |||||||||
Function / homology | ![]() ![]() ![]() ![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Ferrero, D.S. / Falqui, M. / Verdaguer, N. | |||||||||
Funding support | ![]()
| |||||||||
![]() | ![]() Title: Snapshots of a Non-Canonical RdRP in Action. Authors: Ferrero, D.S. / Falqui, M. / Verdaguer, N. | |||||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 305.4 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 200.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
Related structure data | ![]() 7om2C ![]() 7om6C ![]() 7om7C ![]() 7omaC ![]() 4xhiS S: Starting model for refinement C: citing same article ( |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||||||
Unit cell |
|
-
Components
#1: Protein | ![]() Mass: 77110.609 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.43 Å3/Da / Density % sol: 49.29 % |
---|---|
Crystal grow![]() | Temperature: 293 K / Method: vapor diffusion, sitting drop Details: 0.1M sodium acetate pH4.6, 0.25M (NH4)SO4, 26% PEG4000 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Dec 18, 2018 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 3→48.52 Å / Num. obs: 29359 / % possible obs: 98.22 % / Redundancy: 4.8 % / Biso Wilson estimate: 78.86 Å2 / CC1/2: 0.941 / Rpim(I) all: 0.1552 / Rrim(I) all: 0.3546 / Net I/σ(I): 10.52 |
Reflection shell | Resolution: 3→3.107 Å / Rmerge(I) obs: 1.217 / Mean I/σ(I) obs: 1.45 / Num. unique obs: 2956 / CC1/2: 0.514 / Rpim(I) all: 0.573 / % possible all: 99.29 |
-
Processing
Software |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure![]() ![]() Starting model: 4XHI Resolution: 3→48.52 Å / SU ML: 0.4582 / Cross valid method: FREE R-VALUE / σ(F): 1.33 / Phase error: 32.2728 Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 90.24 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3→48.52 Å
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LS refinement shell |
|