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Yorodumi- PDB-7l2g: NMR solution structure of Nak1 from the Necator americanus hookworm -
+Open data
-Basic information
Entry | Database: PDB / ID: 7l2g | ||||||
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Title | NMR solution structure of Nak1 from the Necator americanus hookworm | ||||||
Components | ShTK domain protein | ||||||
Keywords | IMMUNE SYSTEM | ||||||
Function / homology | ShK domain-like / ShKT domain / ShKT domain profile. / ShTK domain protein Function and homology information | ||||||
Biological species | Necator americanus (New World hookworm) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Smallwood, T.B. / Rosengren, K.J. / Clark, R.J. | ||||||
Funding support | Australia, 1items
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Citation | Journal: J.Biol.Chem. / Year: 2021 Title: Synthetic hookworm-derived peptides are potent modulators of primary human immune cell function that protect against experimental colitis in vivo. Authors: Smallwood, T.B. / Navarro, S. / Cristofori-Armstrong, B. / Watkins, T.S. / Tungatt, K. / Ryan, R.Y.M. / Haigh, O.L. / Lutzky, V.P. / Mulvenna, J.P. / Rosengren, K.J. / Loukas, A. / Miles, J.J. / Clark, R.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7l2g.cif.gz | 268.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7l2g.ent.gz | 228.5 KB | Display | PDB format |
PDBx/mmJSON format | 7l2g.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/l2/7l2g ftp://data.pdbj.org/pub/pdb/validation_reports/l2/7l2g | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 4377.214 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) Necator americanus (New World hookworm) / References: UniProt: W2TBE5 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution / Contents: 1 mg/mL Nak1, 90% H2O/10% D2O / Label: Nak1 / Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 1 mg/mL / Component: Nak1 / Isotopic labeling: natural abundance |
Sample conditions | Ionic strength: 0 mM / Label: Conditions_1 / pH: 3.5 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 50 / Conformers submitted total number: 20 |