登録情報 | データベース: PDB / ID: 7duf |
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タイトル | Crystal structure of VIM1 PHD finger. |
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要素 | E3 ubiquitin-protein ligase ORTHRUS 2 |
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キーワード | LIGASE / ORTHRUS 2 / plant homeodomain / Zinc finger / Arabidopsis / PHD finger |
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機能・相同性 | 機能・相同性情報
: / : / : / methyl-CpNpG binding / methyl-CpNpN binding / positive regulation of DNA methylation-dependent heterochromatin formation / chromocenter / double-stranded methylated DNA binding / pericentric heterochromatin formation / methyl-CpG binding ...: / : / : / methyl-CpNpG binding / methyl-CpNpN binding / positive regulation of DNA methylation-dependent heterochromatin formation / chromocenter / double-stranded methylated DNA binding / pericentric heterochromatin formation / methyl-CpG binding / RING-type E3 ubiquitin transferase / ubiquitin-protein transferase activity / ubiquitin protein ligase activity / histone binding / protein ubiquitination / cell division / chromatin binding / nucleus / metal ion binding類似検索 - 分子機能 SRA-YDG / SRA-YDG superfamily / SAD/SRA domain / YDG domain profile. / SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. / Zinc finger, RING-type, eukaryotic / RING-type zinc-finger / PUA-like superfamily / Zinc finger, RING-type, conserved site / Zinc finger RING-type signature. ...SRA-YDG / SRA-YDG superfamily / SAD/SRA domain / YDG domain profile. / SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. / Zinc finger, RING-type, eukaryotic / RING-type zinc-finger / PUA-like superfamily / Zinc finger, RING-type, conserved site / Zinc finger RING-type signature. / Zinc finger, PHD-type, conserved site / Ring finger / Zinc finger PHD-type signature. / Zinc finger PHD-type profile. / Zinc finger, PHD-finger / Zinc finger, PHD-type / PHD zinc finger / Zinc finger RING-type profile. / Zinc finger, RING-type / Zinc finger, FYVE/PHD-type / Zinc finger, RING/FYVE/PHD-type類似検索 - ドメイン・相同性 |
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生物種 | Arabidopsis thaliana (シロイヌナズナ) |
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手法 | X線回折 / シンクロトロン / 単波長異常分散 / 解像度: 2.61 Å |
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データ登録者 | Abhishek, S. / Deeksha, W. / Patel, D.J. / Rajakumara, E. |
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引用 | ジャーナル: Biochemistry / 年: 2021 タイトル: Helical and beta-Turn Conformations in the Peptide Recognition Regions of the VIM1 PHD Finger Abrogate H3K4 Peptide Recognition. 著者: Abhishek, S. / Deeksha, W. / Rajakumara, E. |
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履歴 | 登録 | 2021年1月8日 | 登録サイト: PDBJ / 処理サイト: PDBJ |
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改定 1.0 | 2021年8月25日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2022年2月16日 | Group: Database references / カテゴリ: citation / citation_author Item: _citation.journal_volume / _citation.page_first ..._citation.journal_volume / _citation.page_first / _citation.page_last / _citation_author.identifier_ORCID |
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改定 1.2 | 2024年5月29日 | Group: Data collection / カテゴリ: chem_comp_atom / chem_comp_bond |
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