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Open data
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Basic information
Entry | Database: PDB / ID: 7ccm | ||||||
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Title | Crystal structure of selenomethionine-derived human BFK | ||||||
![]() | Bcl-2-like protein 15 | ||||||
![]() | APOPTOSIS / BCL-2 family kin | ||||||
Function / homology | Bcl-2-like protein 15 / Bcl-2-like superfamily / regulation of apoptotic process / apoptotic process / nucleus / cytosol / Bcl-2-like protein 15![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Oh, E.K. / Jang, D.M. / Han, B.W. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Structural analyses on human BFK, a Novel BCL-2 Family Member. Authors: Jang, D.M. / Oh, E.K. / Han, B.W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 94.1 KB | Display | ![]() |
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PDB format | ![]() | 73.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 437.1 KB | Display | ![]() |
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Full document | ![]() | 437.4 KB | Display | |
Data in XML | ![]() | 15.7 KB | Display | |
Data in CIF | ![]() | 21 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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3 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 20235.693 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Water | ChemComp-HOH / | Has ligand of interest | N | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal grow | Temperature: 289 K / Method: vapor diffusion, sitting drop / pH: 5.5 / Details: 0.1 M Bis-Tris pH 5.5, 28% PEG 3350 |
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-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() |
Detector | Type: DECTRIS EIGER X 9M / Detector: PIXEL / Date: Nov 11, 2019 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97918 Å / Relative weight: 1 |
Reflection | Resolution: 2.45→50 Å / Num. obs: 15406 / % possible obs: 99.1 % / Redundancy: 3.1 % / CC1/2: 0.997 / Rmerge(I) obs: 0.071 / Net I/σ(I): 12.32 |
Reflection shell | Resolution: 2.45→2.49 Å / Redundancy: 2 % / Rmerge(I) obs: 0.784 / Mean I/σ(I) obs: 1.06 / Num. unique obs: 708 / CC1/2: 0.803 / % possible all: 90.9 |
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Processing
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Refinement | Method to determine structure: ![]() Details: Hydrogens have been added in their riding positions
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK BULK SOLVENT | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 39.143 Å2
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Refinement step | Cycle: LAST / Resolution: 2.45→38.05 Å
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Refine LS restraints |
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LS refinement shell |
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