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- PDB-7bts: Structure of human beta1 adrenergic receptor bound to epinephrine... -
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Open data
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Basic information
Entry | Database: PDB / ID: 7bts | ||||||
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Title | Structure of human beta1 adrenergic receptor bound to epinephrine and nanobody 6B9 | ||||||
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![]() | MEMBRANE PROTEIN / G protein coupled receptor | ||||||
Function / homology | ![]() viral release from host cell by cytolysis / peptidoglycan catabolic process / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / host cell cytoplasm / defense response to bacterium Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Xu, X. / Kaindl, J. / Clark, M. / Hubner, H. / Hirata, K. / Sunahara, R. / Gmeiner, P. / Kobilka, B.K. / Liu, X. | ||||||
![]() | ![]() Title: Binding pathway determines norepinephrine selectivity for the human beta 1 AR over beta 2 AR. Authors: Xu, X. / Kaindl, J. / Clark, M.J. / Hubner, H. / Hirata, K. / Sunahara, R.K. / Gmeiner, P. / Kobilka, B.K. / Liu, X. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 141.2 KB | Display | ![]() |
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PDB format | ![]() | 97.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1 MB | Display | ![]() |
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Full document | ![]() | 1 MB | Display | |
Data in XML | ![]() | 22.2 KB | Display | |
Data in CIF | ![]() | 29.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7bu6C ![]() 7bu7C ![]() 7bvqC ![]() 4ldeS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
-Protein / Antibody , 2 types, 2 molecules AB
#1: Protein | Mass: 52235.879 Da / Num. of mol.: 1 / Mutation: C944T,C987A Source method: isolated from a genetically manipulated source Details: Chain A 1261 Cys to Chain A 1314 LEU are truncated region. Source: (gene. exp.) ![]() ![]() Gene: e, T4Tp126, ADRB1, ADRB1R, B1AR / Production host: ![]() ![]() |
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#2: Antibody | Mass: 12949.375 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
-Non-polymers , 6 types, 11 molecules ![](data/chem/img/ALE.gif)
![](data/chem/img/SO4.gif)
![](data/chem/img/NA.gif)
![](data/chem/img/EPE.gif)
![](data/chem/img/CLR.gif)
![](data/chem/img/1WV.gif)
![](data/chem/img/SO4.gif)
![](data/chem/img/NA.gif)
![](data/chem/img/EPE.gif)
![](data/chem/img/CLR.gif)
![](data/chem/img/1WV.gif)
#3: Chemical | ChemComp-ALE / | ||||||||
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#4: Chemical | ChemComp-SO4 / #5: Chemical | ChemComp-NA / | #6: Chemical | ChemComp-EPE / | #7: Chemical | ChemComp-CLR / | #8: Chemical | ChemComp-1WV / ( | |
-Details
Has ligand of interest | Y |
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Sequence details | THE GENEBANK ENTRY NP_000675 IS A REFERENCE SEQUENCE FOR THE RESIDUES FROM 171TH to 462TH OF CHAIN A. |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 4.59 Å3/Da / Density % sol: 73.2 % |
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Crystal grow | Temperature: 293 K / Method: lipidic cubic phase Details: 100 mM HEPES, pH 7.5, 80-180 mM Sodium Sulfate, 38-42% PEG400 or PEG300, 10mM epinephrine |
-Data collection
Diffraction | Mean temperature: 80 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER X 9M / Detector: PIXEL / Date: Feb 4, 2018 |
Radiation | Monochromator: liquid nitrogen-cooled double crystal Si(111) Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 3.1→50 Å / Num. obs: 20331 / % possible obs: 96.8 % / Redundancy: 11.4 % / Biso Wilson estimate: 74.88 Å2 / CC1/2: 0.982 / Net I/σ(I): 5.59 |
Reflection shell | Resolution: 3.1→3.2 Å / Redundancy: 7.6 % / Mean I/σ(I) obs: 1.37 / Num. unique obs: 897 / CC1/2: 0.5 / % possible all: 58.3 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 4LDE Resolution: 3.13→19.98 Å / SU ML: 0.429 / Cross valid method: FREE R-VALUE / σ(F): 1.36 / Phase error: 26.9635 Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 80.32 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3.13→19.98 Å
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Refine LS restraints |
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LS refinement shell |
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