+Open data
-Basic information
Entry | Database: PDB / ID: 7am1 | ||||||
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Title | Structure of yeast Ssd1, a pseudonuclease | ||||||
Components | Protein SSD1 | ||||||
Keywords | RNA BINDING PROTEIN / stress response / Ssd1 / pseudonuclease / RNB family | ||||||
Function / homology | Function and homology information regulation of fungal-type cell wall organization / cellular bud / exosome (RNase complex) / intracellular mRNA localization / cellular bud neck / regulation of G1 to G0 transition / mRNA catabolic process / mRNA regulatory element binding translation repressor activity / mRNA 3'-UTR binding / P-body ...regulation of fungal-type cell wall organization / cellular bud / exosome (RNase complex) / intracellular mRNA localization / cellular bud neck / regulation of G1 to G0 transition / mRNA catabolic process / mRNA regulatory element binding translation repressor activity / mRNA 3'-UTR binding / P-body / mRNA 5'-UTR binding / cytoplasmic stress granule / 3'-5'-RNA exonuclease activity / negative regulation of translation / cell cycle / cell division / mRNA binding / nucleus / cytoplasm Similarity search - Function | ||||||
Biological species | Saccharomyces cerevisiae S288C (yeast) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.9 Å | ||||||
Authors | Cook, A.G. / Jayachandran, U. | ||||||
Funding support | United Kingdom, 1items
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Citation | Journal: Nucleic Acids Res. / Year: 2022 Title: Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition site. Authors: Bayne, R.A. / Jayachandran, U. / Kasprowicz, A. / Bresson, S. / Tollervey, D. / Wallace, E.W.J. / Cook, A.G. #1: Journal: Acta Crystallogr., Sect. D: Biol. Crystallogr. / Year: 2012 Title: Towards automated crystallographic structure refinement with phenix.refine. Authors: Afonine, P.V. / Grosse-Kunstleve, R.W. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7am1.cif.gz | 1.1 MB | Display | PDBx/mmCIF format |
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PDB format | pdb7am1.ent.gz | 759.3 KB | Display | PDB format |
PDBx/mmJSON format | 7am1.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 7am1_validation.pdf.gz | 334.4 KB | Display | wwPDB validaton report |
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Full document | 7am1_full_validation.pdf.gz | 342.1 KB | Display | |
Data in XML | 7am1_validation.xml.gz | 58.2 KB | Display | |
Data in CIF | 7am1_validation.cif.gz | 83.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/am/7am1 ftp://data.pdbj.org/pub/pdb/validation_reports/am/7am1 | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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