- PDB-6zwa: CLIP peptide bound to chicken MHC class II molecule (BL-2) from B... -
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基本情報
登録情報
データベース: PDB / ID: 6zwa
タイトル
CLIP peptide bound to chicken MHC class II molecule (BL-2) from B19 haplotype
要素
Invariant chain isoform p41,MHC class II beta chain 2
MHC class II alpha chain
キーワード
IMMUNE SYSTEM (免疫系) / CLIP / MHC classII / BLA / BLB2
機能・相同性
機能・相同性情報
MHC protein complex / Phosphorylation of CD3 and TCR zeta chains / Translocation of ZAP-70 to Immunological synapse / Generation of second messenger molecules / Cell surface interactions at the vascular wall / MHC class II antigen presentation / PD-1 signaling / negative regulation of peptide secretion / macrophage migration inhibitory factor signaling pathway / NOS2-CD74 complex ...MHC protein complex / Phosphorylation of CD3 and TCR zeta chains / Translocation of ZAP-70 to Immunological synapse / Generation of second messenger molecules / Cell surface interactions at the vascular wall / MHC class II antigen presentation / PD-1 signaling / negative regulation of peptide secretion / macrophage migration inhibitory factor signaling pathway / NOS2-CD74 complex / MHC class II protein binding, via antigen binding groove / positive regulation of dendritic cell antigen processing and presentation / negative regulation of T cell differentiation / macrophage migration inhibitory factor binding / positive regulation of macrophage migration inhibitory factor signaling pathway / protein trimerization / macrophage migration inhibitory factor receptor complex / positive regulation of cytokine-mediated signaling pathway / T cell activation involved in immune response / positive regulation of type 2 immune response / negative thymic T cell selection / positive regulation of prostaglandin biosynthetic process / MHC class II protein binding / antigen processing and presentation of peptide or polysaccharide antigen via MHC class II / negative regulation of mature B cell apoptotic process / positive thymic T cell selection / positive regulation of monocyte differentiation / CD4 receptor binding / positive regulation of kinase activity / positive regulation of chemokine (C-X-C motif) ligand 2 production / positive regulation of neutrophil chemotaxis / cytokine receptor activity / positive regulation of macrophage cytokine production / prostaglandin biosynthetic process / positive regulation of T cell differentiation / negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator / response to type II interferon / nitric-oxide synthase binding / chaperone cofactor-dependent protein refolding / negative regulation of DNA damage response, signal transduction by p53 class mediator / immunoglobulin mediated immune response / antigen processing and presentation / MHC class I protein binding / protein folding chaperone / positive regulation of B cell proliferation / エンドソーム / negative regulation of cell migration / positive regulation of interleukin-8 production / intracellular protein transport / MHC class II protein complex / positive regulation of interleukin-6 production / antigen processing and presentation of exogenous peptide antigen via MHC class II / positive regulation of fibroblast proliferation / positive regulation of peptidyl-tyrosine phosphorylation / amyloid-beta binding / positive regulation of canonical NF-kappaB signal transduction / 獲得免疫系 / positive regulation of viral entry into host cell / リソソーム / membrane => GO:0016020 / positive regulation of ERK1 and ERK2 cascade / 免疫応答 / external side of plasma membrane / positive regulation of DNA-templated transcription / ゴルジ体 / 細胞膜 / 小胞体 / 細胞核 / 細胞質 類似検索 - 分子機能
MHC class II-associated invariant chain, trimerisation / MHC class II-associated invariant chain/CLIP, MHC II-interacting / MHC class II-associated invariant chain / MHC class II-associated invariant chain, trimerisation domain superfamily / HLA class II histocompatibility antigen, gamma subunit / Class II MHC-associated invariant chain trimerisation domain / CLIP, MHC2 interacting / Thyroglobulin type-1 / Thyroglobulin type-1 superfamily / Thyroglobulin type-1 repeat ...MHC class II-associated invariant chain, trimerisation / MHC class II-associated invariant chain/CLIP, MHC II-interacting / MHC class II-associated invariant chain / MHC class II-associated invariant chain, trimerisation domain superfamily / HLA class II histocompatibility antigen, gamma subunit / Class II MHC-associated invariant chain trimerisation domain / CLIP, MHC2 interacting / Thyroglobulin type-1 / Thyroglobulin type-1 superfamily / Thyroglobulin type-1 repeat / Thyroglobulin type-1 domain profile. / Thyroglobulin type I repeats. / MHC class II, beta chain, N-terminal / Class II histocompatibility antigen, beta domain / Class II histocompatibility antigen, beta domain / MHC class II, alpha chain, N-terminal / Class II histocompatibility antigen, alpha domain / Class II histocompatibility antigen, alpha domain / MHC class II, alpha/beta chain, N-terminal / MHC classes I/II-like antigen recognition protein / Immunoglobulin/major histocompatibility complex, conserved site / Immunoglobulins and major histocompatibility complex proteins signature. / Immunoglobulin C-Type / Immunoglobulin C1-set / Immunoglobulin C1-set domain / Ig-like domain profile. / Immunoglobulin-like domain / Immunoglobulin-like domain superfamily / Immunoglobulin-like fold 類似検索 - ドメイン・相同性
DI(HYDROXYETHYL)ETHER / MHC class II beta chain 2 / MHC class II alpha chain / Invariant chain isoform p41 類似検索 - 構成要素
解像度: 1.68→55.8 Å / Cor.coef. Fo:Fc: 0.957 / Cor.coef. Fo:Fc free: 0.945 / SU B: 3.79 / SU ML: 0.113 / 交差検証法: THROUGHOUT / σ(F): 0 / ESU R: 0.113 / ESU R Free: 0.113 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
Rfactor
反射数
%反射
Selection details
Rfree
0.2519
2441
4.8 %
RANDOM
Rwork
0.2164
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obs
0.2182
48269
94.74 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK