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Open data
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Basic information
Entry | Database: PDB / ID: 6ycy | ||||||
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Title | Plasmodium falciparum Myosin A full-length, post-rigor state | ||||||
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![]() | MOTOR PROTEIN / Myosin A / Myosin / Plasmodium / Myosin XIV / Myosin 14 | ||||||
Function / homology | ![]() pellicle / glideosome / inner membrane pellicle complex / mitotic actomyosin contractile ring assembly / vesicle transport along actin filament / myosin complex / myosin II complex / microfilament motor activity / myosin heavy chain binding / cytoskeletal motor activity ...pellicle / glideosome / inner membrane pellicle complex / mitotic actomyosin contractile ring assembly / vesicle transport along actin filament / myosin complex / myosin II complex / microfilament motor activity / myosin heavy chain binding / cytoskeletal motor activity / actin filament organization / actin filament binding / actin cytoskeleton / actin binding / vesicle / calcium ion binding / ATP binding / membrane / plasma membrane / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Moussaoui, D. / Robblee, J.P. / Auguin, D. / Krementsova, E.B. / Robert-Paganin, J. / Trybus, K.M. / Houdusse, A. | ||||||
Funding support | 1items
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![]() | ![]() Title: Full-length Plasmodium falciparum myosin A and essential light chain PfELC structures provide new anti-malarial targets. Authors: Moussaoui, D. / Robblee, J.P. / Auguin, D. / Krementsova, E.B. / Haase, S. / Blake, T.C.A. / Baum, J. / Robert-Paganin, J. / Trybus, K.M. / Houdusse, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 443.2 KB | Display | ![]() |
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PDB format | ![]() | 372.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 846.6 KB | Display | ![]() |
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Full document | ![]() | 861.3 KB | Display | |
Data in XML | ![]() | 40.8 KB | Display | |
Data in CIF | ![]() | 58.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6ycxC ![]() 6yczC ![]() 6i7dS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
-Protein , 3 types, 3 molecules ABE
#1: Protein | Mass: 92474.305 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Gene: PF13_0233 / Production host: ![]() ![]() |
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#2: Protein | Mass: 23510.738 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Gene: PF3D7_1246400 / Production host: ![]() ![]() |
#3: Protein | Mass: 15692.797 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Gene: PF3D7_1017500 / Production host: ![]() ![]() |
-Non-polymers , 5 types, 296 molecules ![](data/chem/img/EDO.gif)
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![](data/chem/img/MG.gif)
![](data/chem/img/ADP.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/SO4.gif)
![](data/chem/img/MG.gif)
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#4: Chemical | ChemComp-EDO / | ||||||
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#5: Chemical | #6: Chemical | ChemComp-MG / | #7: Chemical | ChemComp-ADP / | #8: Water | ChemComp-HOH / | |
-Details
Has ligand of interest | Y |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.31 Å3/Da / Density % sol: 62.83 % |
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Crystal grow | Temperature: 277.15 K / Method: vapor diffusion, hanging drop Details: 1.9M Ammonium sulfate, 0.1M Sodium HEPES pH 6.8, 2% PEG400 |
-Data collection
Diffraction | Mean temperature: 77.36 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER2 XE 16M / Detector: PIXEL / Date: Jul 28, 2019 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.906019 Å / Relative weight: 1 |
Reflection | Resolution: 2.55→25.7 Å / Num. obs: 57507 / % possible obs: 99.62 % / Redundancy: 11.2 % / CC1/2: 0.998 / Net I/σ(I): 10.57 |
Reflection shell | Resolution: 2.55→2.641 Å / Num. unique obs: 5563 / CC1/2: 0.505 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 6I7D Resolution: 2.55→25.7 Å / Cor.coef. Fo:Fc: 0.944 / Cor.coef. Fo:Fc free: 0.925 / Rfactor Rfree error: 0 / SU R Cruickshank DPI: 0.316 / Cross valid method: THROUGHOUT / σ(F): 0 / SU R Blow DPI: 0.319 / SU Rfree Blow DPI: 0.241 / SU Rfree Cruickshank DPI: 0.243
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Displacement parameters | Biso max: 188.77 Å2 / Biso mean: 79.51 Å2 / Biso min: 32.63 Å2
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Refine analyze | Luzzati coordinate error obs: 0.34 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: final / Resolution: 2.55→25.7 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.55→2.62 Å / Rfactor Rfree error: 0 / Total num. of bins used: 20
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Refinement TLS params. | Method: refined / Refine-ID: X-RAY DIFFRACTION
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Refinement TLS group |
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