- PDB-6wcw: Structure of human Rubicon RH domain in complex with GTP-bound Rab7 -
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Basic information
Entry
Database: PDB / ID: 6wcw
Title
Structure of human Rubicon RH domain in complex with GTP-bound Rab7
Components
Ras-related protein Rab-7a
Run domain Beclin-1-interacting and cysteine-rich domain-containing protein
Keywords
METAL BINDING PROTEIN / autophagy / rab / gtpase / aging / zinc finger / g protein
Function / homology
Function and homology information
: / negative regulation of autophagosome maturation / lipophagy / positive regulation of viral process / phagosome acidification / protein to membrane docking / epidermal growth factor catabolic process / negative regulation of intralumenal vesicle formation / alveolar lamellar body / negative regulation of exosomal secretion ...: / negative regulation of autophagosome maturation / lipophagy / positive regulation of viral process / phagosome acidification / protein to membrane docking / epidermal growth factor catabolic process / negative regulation of intralumenal vesicle formation / alveolar lamellar body / negative regulation of exosomal secretion / Suppression of autophagy / phagosome-lysosome fusion / establishment of vesicle localization / phagosome maturation / phosphatidylinositol phosphate binding / retromer complex binding / endosome to plasma membrane protein transport / melanosome membrane / phagophore assembly site membrane / multivesicular body sorting pathway / RAB geranylgeranylation / protein targeting to lysosome / early endosome to late endosome transport / positive regulation of exosomal secretion / negative regulation of endocytosis / RAB GEFs exchange GTP for GDP on RABs / RHOF GTPase cycle / RHOD GTPase cycle / retrograde transport, endosome to Golgi / TBC/RABGAPs / immune system process / endosome to lysosome transport / RHOJ GTPase cycle / RHOQ GTPase cycle / autophagosome membrane / CDC42 GTPase cycle / RHOH GTPase cycle / autophagosome assembly / viral release from host cell / RHOG GTPase cycle / intracellular transport / RAC2 GTPase cycle / RAC3 GTPase cycle / phagocytosis / lipid catabolic process / bone resorption / Prevention of phagosomal-lysosomal fusion / RAC1 GTPase cycle / MHC class II antigen presentation / phagocytic vesicle / negative regulation of autophagy / lipid droplet / small monomeric GTPase / secretory granule membrane / G protein activity / mitochondrial membrane / response to bacterium / synaptic vesicle membrane / small GTPase binding / autophagy / endocytosis / positive regulation of protein catabolic process / phagocytic vesicle membrane / GDP binding / protein transport / late endosome / late endosome membrane / lysosome / early endosome / endosome membrane / lysosomal membrane / intracellular membrane-bounded organelle / GTPase activity / Neutrophil degranulation / GTP binding / Golgi apparatus / mitochondrion / extracellular exosome / nucleoplasm / plasma membrane / cytosol Similarity search - Function
Rubicon Homology Domain / Rubicon Homology Domain / DUF4206 / RUN / RUN domain / RUN domain superfamily / RUN domain / RUN domain profile. / small GTPase Rab1 family profile. / Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases ...Rubicon Homology Domain / Rubicon Homology Domain / DUF4206 / RUN / RUN domain / RUN domain superfamily / RUN domain / RUN domain profile. / small GTPase Rab1 family profile. / Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases / Rho (Ras homology) subfamily of Ras-like small GTPases / Ras subfamily of RAS small GTPases / Small GTPase / Ras family / Rab subfamily of small GTPases / Small GTP-binding protein domain / P-loop containing nucleotide triphosphate hydrolases / P-loop containing nucleoside triphosphate hydrolase / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta Similarity search - Domain/homology
GUANOSINE-5'-TRIPHOSPHATE / Ras-related protein Rab-7a / Run domain Beclin-1-interacting and cysteine-rich domain-containing protein Similarity search - Component
Evidence: gel filtration, Complex tightly associates as a heterodimer on size exclusion chromatography., immunoprecipitation, The Rubicon RH domain is sufficient to pull down GTP-bound Rab7 from cell ...Evidence: gel filtration, Complex tightly associates as a heterodimer on size exclusion chromatography., immunoprecipitation, The Rubicon RH domain is sufficient to pull down GTP-bound Rab7 from cell lysates., microscopy, Rubicon and Rab7 colocalize in human cells.
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