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- PDB-6s7r: Non-square conformations of KtrA R16A mutant rings with bound ADP -

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IDまたはキーワード:

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基本情報

登録情報
データベース: PDB / ID: 6s7r
タイトルNon-square conformations of KtrA R16A mutant rings with bound ADP
要素Ktr system potassium uptake protein A
キーワードTRANSPORT PROTEIN / RCK domain / potassium homeostasis / cation channel / non-square conformation octameric ring / adp
機能・相同性
機能・相同性情報


potassium channel activity / potassium ion transmembrane transport / identical protein binding / plasma membrane
類似検索 - 分子機能
Regulator of K+ conductance, C-terminal domain / : / TrkA-N domain / Regulator of K+ conductance, C-terminal / Regulator of K+ conductance, C-terminal domain superfamily / TrkA-C domain / RCK C-terminal domain profile. / Regulator of K+ conductance, N-terminal / RCK N-terminal domain profile. / NAD(P)-binding Rossmann-like Domain ...Regulator of K+ conductance, C-terminal domain / : / TrkA-N domain / Regulator of K+ conductance, C-terminal / Regulator of K+ conductance, C-terminal domain superfamily / TrkA-C domain / RCK C-terminal domain profile. / Regulator of K+ conductance, N-terminal / RCK N-terminal domain profile. / NAD(P)-binding Rossmann-like Domain / Alpha-Beta Plaits / NAD(P)-binding domain superfamily / Rossmann fold / 2-Layer Sandwich / 3-Layer(aba) Sandwich / Alpha Beta
類似検索 - ドメイン・相同性
ADENOSINE-5'-DIPHOSPHATE / Ktr system potassium uptake protein A
類似検索 - 構成要素
生物種Bacillus subtilis subsp. subtilis str. 168 (枯草菌)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 3.73 Å
データ登録者Teixeira-Duarte, C.M. / Fonseca, F. / Morais-Cabral, J.H.
資金援助 ポルトガル, 2件
組織認可番号
Fundacao para a Ciencia e a TecnologiaPTDC/BIA-BQM/29863/2017 ポルトガル
Fundacao para a Ciencia e a TecnologiaPOCI-01-0145-FEDER-007274 ポルトガル
引用ジャーナル: Elife / : 2019
タイトル: Activation of a nucleotide-dependent RCK domain requires binding of a cation cofactor to a conserved site.
著者: Teixeira-Duarte, C.M. / Fonseca, F. / Morais Cabral, J.H.
履歴
登録2019年7月5日登録サイト: PDBE / 処理サイト: PDBE
改定 1.02020年1月8日Provider: repository / タイプ: Initial release
改定 1.12024年1月24日Group: Advisory / Data collection ...Advisory / Data collection / Database references / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_unobs_or_zero_occ_atoms / struct_ncs_dom_lim
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
A: Ktr system potassium uptake protein A
B: Ktr system potassium uptake protein A
C: Ktr system potassium uptake protein A
D: Ktr system potassium uptake protein A
E: Ktr system potassium uptake protein A
F: Ktr system potassium uptake protein A
G: Ktr system potassium uptake protein A
H: Ktr system potassium uptake protein A
I: Ktr system potassium uptake protein A
J: Ktr system potassium uptake protein A
K: Ktr system potassium uptake protein A
L: Ktr system potassium uptake protein A
M: Ktr system potassium uptake protein A
N: Ktr system potassium uptake protein A
O: Ktr system potassium uptake protein A
P: Ktr system potassium uptake protein A
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)404,12632
ポリマ-397,29016
非ポリマー6,83516
00
1
A: Ktr system potassium uptake protein A
B: Ktr system potassium uptake protein A
C: Ktr system potassium uptake protein A
D: Ktr system potassium uptake protein A
E: Ktr system potassium uptake protein A
F: Ktr system potassium uptake protein A
G: Ktr system potassium uptake protein A
H: Ktr system potassium uptake protein A
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)202,06316
ポリマ-198,6458
非ポリマー3,4188
0
タイプ名称対称操作
identity operation1_555x,y,z1
2
I: Ktr system potassium uptake protein A
J: Ktr system potassium uptake protein A
K: Ktr system potassium uptake protein A
L: Ktr system potassium uptake protein A
M: Ktr system potassium uptake protein A
N: Ktr system potassium uptake protein A
O: Ktr system potassium uptake protein A
P: Ktr system potassium uptake protein A
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)202,06316
ポリマ-198,6458
非ポリマー3,4188
0
タイプ名称対称操作
identity operation1_555x,y,z1
単位格子
Length a, b, c (Å)92.967, 97.874, 144.561
Angle α, β, γ (deg.)90.420, 97.100, 110.270
Int Tables number1
Space group name H-MP1
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID詳細 (eV)
11chain K
21chain L
31chain O
41chain P
51chain A
61chain B
71chain C
81chain D
91chain E
101chain F
111chain G
121chain H
131chain I
141chain J
151chain M
161chain N

NCSドメイン領域:

Component-ID: 1 / Ens-ID: 1 / Beg auth comp-ID: ASN / Beg label comp-ID: ASN

Dom-IDEnd auth comp-IDEnd label comp-IDSelection detailsAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
1ASNASNchain KKK6 - 1406 - 140
2ASNASNchain LLL6 - 1406 - 140
3ASNASNchain OOO6 - 1406 - 140
4ASNASNchain PPP6 - 1406 - 140
5METMETchain AAA6 - 2226 - 222
6METMETchain BBB6 - 2226 - 222
7METMETchain CCC6 - 2226 - 222
8METMETchain DDD6 - 2226 - 222
9METMETchain EEE6 - 2226 - 222
10METMETchain FFF6 - 2226 - 222
11METMETchain GGG6 - 2226 - 222
12METMETchain HHH6 - 2226 - 222
13METMETchain III6 - 2226 - 222
14METMETchain JJJ6 - 2226 - 222
15METMETchain MMM6 - 2226 - 222
16METMETchain NNN6 - 2226 - 222

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要素

#1: タンパク質
Ktr system potassium uptake protein A / K(+)-uptake protein KtrA


分子量: 24830.645 Da / 分子数: 16 / 変異: R16A / 由来タイプ: 組換発現
由来: (組換発現) Bacillus subtilis subsp. subtilis str. 168 (枯草菌)
遺伝子: ktrA, yuaA, BSU31090 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: O32080
#2: 化合物
ChemComp-ADP / ADENOSINE-5'-DIPHOSPHATE


分子量: 427.201 Da / 分子数: 16 / 由来タイプ: 合成 / : C10H15N5O10P2 / タイプ: SUBJECT OF INVESTIGATION / コメント: ADP, エネルギー貯蔵分子*YM
研究の焦点であるリガンドがあるかY

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 3.08 Å3/Da / 溶媒含有率: 60.03 %
結晶化温度: 293.15 K / 手法: 蒸気拡散法
詳細: 500mM MOPS+500mM HEPES pH 7.5 (Morpheus kit buffer system 2), 100mM carboxylic acids, 5% PEG 8000, 20% ethylene glycol

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データ収集

回折平均測定温度: 100 K / Serial crystal experiment: N
放射光源由来: シンクロトロン / サイト: SOLEIL / ビームライン: PROXIMA 1 / 波長: 0.97857 Å
検出器タイプ: DECTRIS PILATUS 6M / 検出器: PIXEL / 日付: 2014年12月6日
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 0.97857 Å / 相対比: 1
反射解像度: 3.73→48.8 Å / Num. obs: 46426 / % possible obs: 94 % / 冗長度: 3.5 % / CC1/2: 0.996 / Rmerge(I) obs: 0.095 / Rpim(I) all: 0.06 / Rrim(I) all: 0.112 / Net I/σ(I): 7.4
反射 シェル解像度: 3.73→3.86 Å / 冗長度: 3 % / Rmerge(I) obs: 0.966 / Mean I/σ(I) obs: 1.1 / Num. unique obs: 2484 / CC1/2: 0.494 / Rpim(I) all: 0.632 / % possible all: 51.2

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解析

ソフトウェア
名称バージョン分類
PHENIX1.8.2_1309精密化
XDSデータ削減
XDSデータスケーリング
PHASER位相決定
精密化構造決定の手法: 分子置換
開始モデル: 4j90
解像度: 3.73→48.8 Å / SU ML: 0.6 / 交差検証法: FREE R-VALUE / σ(F): 1.03 / 位相誤差: 34.48
Rfactor反射数%反射
Rfree0.3004 9250 10.08 %
Rwork0.2457 --
obs0.2512 46426 93.23 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å
原子変位パラメータBiso max: 436.54 Å2 / Biso min: 49.27 Å2
精密化ステップサイクル: final / 解像度: 3.73→48.8 Å
タンパク質核酸リガンド溶媒全体
原子数24596 0 432 0 25028
Biso mean--184.55 --
残基数----3144
拘束条件
Refine-IDタイプDev ideal
X-RAY DIFFRACTIONf_bond_d0.00325440
X-RAY DIFFRACTIONf_angle_d0.82434476
X-RAY DIFFRACTIONf_chiral_restr0.0334000
X-RAY DIFFRACTIONf_plane_restr0.0034332
X-RAY DIFFRACTIONf_dihedral_angle_d14.3459424
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDRefine-IDRmsタイプ
11K15205X-RAY DIFFRACTION4.757TORSIONAL
12L15205X-RAY DIFFRACTION4.757TORSIONAL
13O15205X-RAY DIFFRACTION4.757TORSIONAL
14P15205X-RAY DIFFRACTION4.757TORSIONAL
15A15205X-RAY DIFFRACTION4.757TORSIONAL
16B15205X-RAY DIFFRACTION4.757TORSIONAL
17C15205X-RAY DIFFRACTION4.757TORSIONAL
18D15205X-RAY DIFFRACTION4.757TORSIONAL
19E15205X-RAY DIFFRACTION4.757TORSIONAL
110F15205X-RAY DIFFRACTION4.757TORSIONAL
111G15205X-RAY DIFFRACTION4.757TORSIONAL
112H15205X-RAY DIFFRACTION4.757TORSIONAL
113I15205X-RAY DIFFRACTION4.757TORSIONAL
114J15205X-RAY DIFFRACTION4.757TORSIONAL
115M15205X-RAY DIFFRACTION4.757TORSIONAL
116N15205X-RAY DIFFRACTION4.757TORSIONAL
LS精密化 シェル

Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0

解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection Rwork% reflection obs (%)
3.7323-3.77470.622360.4295281
3.7747-3.81910.43541770.4185152552
3.8191-3.86560.37973520.3773290598
3.8656-3.91450.35113230.3662289699
3.9145-3.9660.37073220.3605285999
3.966-4.02030.3393410.3364297999
4.0203-4.07770.36573150.3294288498
4.0777-4.13860.36932960.3279289998
4.1386-4.20320.37583400.3058290498
4.2032-4.27210.3453200.3078289299
4.2721-4.34570.33843180.2966289799
4.3457-4.42470.30473480.285295398
4.4247-4.50970.30493370.2754287498
4.5097-4.60170.33583360.2649285698
4.6017-4.70170.30512820.2786287498
4.7017-4.8110.34023310.281287098
4.811-4.93120.3623050.2738296599
4.9312-5.06440.30914080.2766282698
5.0644-5.21320.33512830.2798295498
5.2132-5.38130.36223210.2559285798
5.3813-5.57340.32583410.2687286599
5.5734-5.79620.3653290.2716299798
5.7962-6.05950.33723400.2664281398
6.0595-6.37830.34323140.2821288298
6.3783-6.7770.35573410.2511288598
6.777-7.29860.35282640.2424296898
7.2986-8.03020.26932920.2179291798
8.0302-9.18550.23423240.1712285997
9.1855-11.54740.19263160.1431286297
11.5474-48.80.24063280.2027279095
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
12.0466-1.7789-6.68123.30811.08838.59360.39131.18960.2967-1.3175-0.84360.65760.6071-0.19370.38971.25970.00780.00860.5941-0.11720.885324.3995-6.3312-20.3656
24.53032.28260.21471.78651.02164.4982-1.21530.5749-0.3766-0.17722.06821.5962-0.31640.3474-0.5821.35070.1074-0.15980.66020.55221.116821.11280.5191-21.2994
35.39794.0176-5.80013.1877-4.6727.7377-0.10481.75050.41950.2010.16261.00121.0570.02940.06220.9057-0.1323-0.17350.84220.61111.529716.428-1.1234-23.745
42.94490.46313.18880.05080.46623.5207-0.3431-0.8114-0.45880.1267-0.4934-0.38350.7936-1.17140.22631.97370.2970.49330.780.28881.226914.1108-11.5498-10.3665
52.09441.60490.13095.6128-3.97378.12260.4760.1082-1.0956-0.0792-0.0021.02791.9947-1.2136-0.7020.9372-0.17610.09440.75020.01281.134524.5628-8.6022-14.1191
69.15073.49380.79194.3666-1.21242.0339-0.6378-0.76930.2487-0.05760.29670.7160.997-0.88830.16020.957-0.1113-0.23060.97780.09640.828723.347-9.1754-4.289
78.70192.9828-0.87275.2593-5.34776.17230.0820.406-0.3211-0.60431.1065-1.2230.2854-0.5569-0.57911.4632-0.0405-0.4760.32930.41990.917829.393-7.1316-9.7884
81.69550.7231-1.69675.4495-5.37485.8507-0.3892-1.21920.42781.58890.514-1.22980.16431.77580.29171.91471.00210.05222.36071.08350.249633.7487-4.1167-3.0919
93.9616-4.76582.69727.10850.2342.06840.0073-0.5740.8417-0.30920.151-1.970.85940.2048-0.12590.55290.0647-0.15510.9232-0.15181.25240.850315.6981-11.6801
102.07030.8163-3.27252.09024.1744.09820.4901-1.1873-0.7508-0.13290.4339-0.2183-0.44721.4592-0.7110.69880.0192-0.01091.53210.03091.019949.550711.6236-16.8245
110.2436-1.0139-0.56264.08242.37131.39850.41661.17920.3864-0.1870.9657-1.0389-0.39530.254-0.53931.4912-0.90020.43271.32720.33761.852458.018625.9563-27.3044
128.73325.49436.59513.91833.84625.5231-0.22011.15680.4708-1.8410.3217-0.8064-0.3254-0.0477-0.26580.9044-0.1150.04492.52650.12730.971757.939716.218-25.1931
134.8428-2.5726-0.52036.8334-1.21430.5645-0.48220.38492.3796-1.11640.0493-2.5042-0.0751-0.13890.24480.9816-0.33840.06231.31760.19471.691154.189419.012-24.9937
141.9563-8.68492.00388.9307-1.85022.08861.2881-0.29343.94941.0235-0.4947-2.9131-0.68532.2219-0.50821.3457-0.6473-0.19761.59920.37731.302537.50324.1995-3.2868
156.2337-3.239-1.37639.5156-3.66442.03281.3605-1.93470.27060.64120.0419-0.2833-0.2361.3491-1.18740.79590.1151-0.03660.8124-0.23980.676239.754715.593-3.1945
166.5532-5.5901-0.45257.90563.34357.9483-0.3369-0.8665-0.00871.81860.47340.42450.23761.2376-0.11061.0906-0.0164-0.33810.7890.29861.188934.946819.75754.4498
170.571-0.76291.49770.9477-1.92833.9296-0.0019-0.99080.92370.8345-0.6430.5804-0.4748-1.59130.20031.70420.62020.06370.8996-0.36651.632624.197530.86991.9779
187.7478-2.5145-1.41772.03158.28312.016-0.3532-0.02072.77-0.21480.2631-1.2985-0.20020.4414-0.0721.0066-0.5505-0.21221.12360.02371.465334.72930.4994-5.2769
191.99732.00618.67977.41524.47622.9215-0.44452.1232-2.42420.01981.00870.55280.49440.4847-0.49440.6302-0.01670.18091.4183-0.48391.612423.060517.397-6.6137
207.5776-6.1203-1.34652.25655.15152.2149-0.1424-0.96911.1499-0.0299-1.076-0.4259-0.6772-1.00661.41030.79770.1845-0.24310.914-0.12061.434825.93626.6649-10.291
215.4511-4.3827-1.89355.1403-0.76993.683-0.40362.47580.573-0.32370.72460.57650.31950.5969-0.34970.65720.302-0.21681.10990.1551.175924.981222.0348-18.3639
224.44530.56643.8559.4617-3.695.2329-0.3098-0.8039-0.5385-0.7760.0758-0.19470.7792-0.81710.30261.1744-0.16750.30030.8732-0.01090.569434.68511.5658-20.1073
233.1743-0.5023-1.61324.21212.19121.6056-0.45960.2331-0.1103-0.71260.4903-0.92920.76220.3065-0.11471.04480.19290.37011.37380.04170.784850.7492-2.2081-27.0787
241.27651.5295-0.51524.27413.52867.17270.5047-1.2360.03211.2154-0.605-1.25460.62210.39870.14571.4552-0.1731-0.25722.0369-0.04261.875258.5968-1.4724-14.362
252.0168-7.3386-7.15185.42326.30052.0016-1.52060.2094-2.3747-0.82310.9737-1.80911.11641.18910.83691.23170.7922-0.01971.991-0.20051.584659.1895-6.722-21.6587
265.80384.10661.43098.32555.77354.682-0.26532.7035-0.8118-0.86191.3754-0.19541.34441.3344-0.75551.28620.12180.18931.5903-0.14770.997146.5788-2.8029-30.8569
275.74022.08441.72644.8566-4.18142.1135-0.2161-0.6496-0.56731.96170.2399-1.364-0.47671.2228-0.14331.24360.1363-0.48540.94570.11221.30761.099141.4074.817
287.82584.727-3.41652.0441.93972.01111.74430.06881.34590.87910.00660.1416-0.35051.0274-1.01861.21960.1395-0.46140.70680.09081.45196.086541.64788.473
291.49662.21630.75673.24671.06890.35160.5555-0.4345-0.16441.9738-0.5409-0.4829-0.38140.53950.08182.35620.4748-0.86551.2198-0.02521.3684-4.832932.431317.9595
306.24560.22350.16582.01461.96262.04290.4183-1.87153.70891.53251.2126-0.0439-2.0189-1.0854-1.0451.40830.32530.21160.9497-0.24981.55-9.216242.505211.3842
31-0.01890.01270.0257-0.0009-0.013-0.0048-0.7474-0.6801-0.33780.5086-0.6092-0.2279-0.40660.28810.63022.60330.2037-0.08650.5583-0.57611.778-5.119127.81952.5524
324.66752.12121.0069-3.06289.9317-0.2392-0.59310.34031.87540.66090.21790.5013-0.4563-0.31641.23010.36550.28751.34750.1620.7926-12.674433.0217.4579
332.41991.31511.27432.6631-0.52164.08640.27110.0099-0.5429-0.9120.78231.8448-0.01880.2995-0.69791.13690.0098-0.45890.91550.52271.043-17.141530.8697-0.432
349.06931.2821-2.52692.1768-4.87158.3285-0.65-0.36610.74590.4586-0.41150.0329-0.3667-1.46710.7650.69850.006-0.17080.9085-0.40471.0395-6.612235.0624-20.0697
350.7752-0.96860.64961.2939-0.76050.4848-0.6034-0.0087-1.88040.85750.8043-0.9681.24370.3813-0.09840.77690.40880.14960.9542-0.22071.1698-14.029942.8453-20.1652
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1211.9719-6.5341-3.69964.65563.79277.10382.0479-0.0615-0.8245-0.0704-0.98160.3933-0.0759-0.1777-0.73482.29870.6130.01982.33760.36181.0754-10.1748-50.5917-85.9133
1222.03633.39121.96854.4735-5.29219.5574-0.2772-2.19340.3196-0.48151.4155-1.41010.48020.258-0.55061.48130.64840.52551.42790.2522.0615-9.8018-50.5316-93.8607
1239.4754-1.9156.71353.0069-2.85151.9985-0.5052-0.45120.0060.42140.1486-2.00910.08451.80030.09571.34310.0639-0.21571.95540.47251.6797-3.9342-44.3927-92.4444
1242.09061.9245-1.47461.9311-2.99961.9966-0.96120.9386-1.2735-0.75260.5502-0.36520.3008-0.20230.30831.32120.19830.48421.3974-0.23561.4224-14.1177-26.8681-102.7242
1256.8667-0.6866-1.35385.65292.31023.32440.7697-1.1058-0.1812.08130.54321.3201-0.45530.1245-0.89091.24420.41910.30810.85670.42791.3154-10.9725-29.8284-113.2114
1260.9842-0.6367-0.56679.7912-0.65035.6844-0.31351.36120.0395-0.9368-0.6070.9534-0.758-0.29690.88051.48160.0667-00.732-0.0451.0477-16.0351-22.5865-126.0187
1272.0151-6.357-4.82291.97792.3241.64191.60641.41590.2344-1.6543-1.0245-0.8904-0.5927-0.8849-0.72891.9991-0.0159-0.6591.07920.03762.1117-20.5259-23.1829-128.7942
1285.5976-0.52240.71812.0668-0.79387.0153-0.7452-1.03441.89831.99361.00110.7307-0.90170.5252-0.22011.7649-0.11080.34810.8263-0.22631.4096-8.9587-22.1049-117.6018
1297.2651-4.0153-6.15922.07450.52265.9852-0.44480.7957-0.18010.1980.99111.6840.1951-2.4327-0.52791.0204-0.1965-0.14832.6150.2571.3306-56.3949-28.6173-74.3452
1307.5791.14080.24387.727-0.30292.91990.1537-0.7283-1.17590.30680.41790.2670.6856-2.1651-0.47430.9466-0.2052-0.08242.01410.11320.8942-49.5208-32.6375-81.2776
1314.5653-1.0023-7.42169.40242.18091.93080.31530.09162.8591-0.5347-1.2486-0.0121-0.25722.6186-0.3144-2.46292.71515.8590.2079-4.8875-5.256-40.6136-18.4633-82.9596
1323.2312.62051.42114.0209-2.19316.185-0.4330.11521.2073-0.3349-1.51380.6138-1.3126-0.80720.97962.04490.5356-0.63412.84820.86551.0858-51.0201-8.8147-66.621
1332.00061.97779.88031.98031.98589.6688-0.7467-0.51972.1451-0.31611.7219-0.33450.3488-0.943-0.65591.66520.63250.53412.56120.01691.5947-42.6358-3.5136-58.0926
1342.0519-0.24647.43597.6179-3.90312.1072-1.42640.93840.8389-0.6507-0.0940.74910.2815-1.38521.40511.87640.69130.23172.1114-0.1481.2766-41.8497-3.5048-64.2689
1357.5735-0.05990.8789.3101-0.16842.06880.4215-0.27781.15112.21020.6266-0.9676-0.4327-0.2994-0.99932.03270.1980.19821.3127-0.26781.2548-31.302-5.12-56.797
1365.8325-4.5585-2.06379.7552.74493.90.18210.76121.38550.7122-1.46851.4489-0.4765-0.55070.72982.04640.32970.27312.7721-1.24621.3744-41.7343-7.8346-53.069
1374.0761.62194.06071.65620.21616.469-0.70810.3284-0.91571.60070.226-0.1485-0.4485-2.09250.32781.75431.038-0.18043.3676-0.8668-0.6921-42.2493-14.7452-50.4129
1381.99151.9956-5.75962.0082-5.49912.9759-0.55972.0626-1.3723-1.23871.21761.0123.8875-0.7752-0.49693.112-0.32-0.21892.4266-0.00681.2299-46.7047-25.2947-51.9548
1392.0496-0.24668.13488.5482-3.58587.8335-0.08290.46860.0523-0.46422.41270.4525-0.82870.3494-0.98391.31680.8211-0.0045.6777-0.32170.1933-48.0984-18.5892-57.8374
1404.35762.55091.62037.01654.29562.6164-0.69890.513-0.3319-0.2008-0.8137-1.58820.10030.6990.69491.6954-0.70970.47762.81970.05391.0046-53.8692-19.7458-70.0316
1418.2413-6.1855-5.25132.0022.01288.7747-0.4222-0.25682.00420.4594-0.10261.9192-3.0014-3.62990.38832.84560.53120.53252.64990.4652.2741-61.5502-16.2496-77.3874
1424.0123-1.2831.64058.6348-2.43922.01111.0975-0.4217-0.7198-0.16491.0690.37580.0886-0.5788-1.24961.2452-0.60280.03492.4388-0.50031.0757-40.6303-43.2746-33.5842
1436.6811-0.9528-1.60726.48082.43069.3186-0.52071.8807-0.3977-0.357-0.101-0.17842.2124-2.55570.66340.9337-0.27040.06231.8132-0.37631.0783-34.5879-47.0361-36.1696
1449.7749-2.78255.86457.4957-4.44612.0084-0.50660.6156-0.32170.13341.61721.64620.15770.4998-1.01991.5719-0.0433-0.10271.8654-0.35712.3768-36.8633-51.7109-38.0805
1454.68091.604-4.58740.5696-1.59734.535-0.35841.14-0.3266-0.9058-0.60581.46191.3771-2.5920.57241.4611-0.77590.10182.8479-0.91421.676-46.7372-41.8123-48.0411
1468.92241.18640.75493.5008-1.44360.741-0.04280.5522-1.1653-0.27361.3291.77451.2121-3.104-0.8730.9056-0.2355-0.38392.7058-0.1881.5781-46.5926-39.8077-35.3605
1478.42522.7449-5.54712.03731.68322.0156-1.66770.604-0.8387-1.79321.00620.22220.69750.21320.47911.2320.1921-0.16141.706-0.31170.935-40.5592-32.3997-44.9495
1482.19090.45234.50898.67440.18089.60630.8228-0.07740.5611-0.49870.7318-0.4033-0.366-1.0467-0.78890.95710.3578-0.36612.4225-0.28510.6982-40.6472-32.098-36.9666
1492.0151-6.17077.94832.00414.82342.01150.74252.4760.9998-1.0612-0.7218-1.6556-2.43951.8926-0.14361.62480.3180.17222.49280.25210.9812-36.0424-21.9863-40.7378
1502.0594-1.92682.66314.3511-2.03636.09070.0650.40530.3262-0.73610.27030.17690.1982-0.8268-0.43440.82940.20910.04451.3249-0.03530.8138-23.6347-28.6607-30.1435
1512.176-3.04261.42030.8557-0.44511.69160.21330.65640.3829-0.0971-0.12640.0199-0.29220.6198-0.20510.5487-0.1048-0.10850.9979-0.11810.8093-16.4814-28.5792-15.8648
1528.3316-2.8276-7.66021.10633.42082.00211.2629-0.46550.7191-0.10850.069-0.0506-0.19890.1915-0.5333-2.61350.256-4.13281.87150.9846-2.5933-7.667-32.5196-1.7036
1539.64561.26139.82162.01134.92862.01280.3003-0.90690.74741.4862-0.04330.2062-0.6124-0.3128-0.01652.31140.3993-0.27741.7583-0.35080.7801-13.5728-22.6839-3.8385
1546.5578-0.7454-0.18342.07961.23714.51290.4514-2.3461-1.73261.6378-0.03650.08061.6003-1.2233-0.23670.9362-0.5788-0.12921.17190.20061.1951-14.3811-39.3821-6.0704
1551.9893.2441-9.02882.14572.32552.20061.8072-0.21550.7469-1.1859-0.0049-0.1893-1.79420.1463-1.6741.0703-0.1169-0.02680.89970.05360.9036-12.7992-24.7304-12.3505
1567.2636-0.8465-0.26476.9249-0.02162.2032-0.48741.88580.0419-1.3642-0.1341-0.6414-1.18561.47280.48931.0797-0.05870.30621.44210.24910.9704-9.5269-24.5637-40.4209
1579.12727.02646.83447.83522.08619.73651.06762.1549-0.486-0.7647-0.2801-0.2080.84050.715-0.83411.10950.07160.3281.1672-0.40551.2454-5.6528-38.7246-44.2102
1585.852-0.8836-2.918.50051.29487.10220.6328-0.4458-0.59720.3806-0.5908-0.59562.36140.415-0.02210.9970.1591-0.00161.02180.14480.8666-10.4121-41.1167-36.2913
1594.2993-1.10954.30912.15031.05984.6628-0.06250.5254-1.4230.34520.2144-0.09090.81530.0627-0.3031.1031-0.3185-0.08691.35220.08041.0652-31.8372-37.823-26.9537
1605.93761.0637-2.39483.79032.84845.76820.75081.0553-1.4946-0.824-1.20030.65350.478-0.79620.43930.5067-0.0456-0.12281.4378-0.31651.0105-28.9591-36.8635-16.0568
1617.30410.86770.19556.36274.30192.9955-0.6779-1.58160.06691.9937-0.23361.27741.107-1.82930.77621.07650.0760.13622.04960.00340.8012-38.5115-30.1082-5.4153
1627.0998-4.08152.94465.72230.69662.972-0.6573-0.48220.5649-0.31090.54081.8204-0.9841-0.9060.15770.71590.1585-0.26511.8405-0.30981.404-32.0239-18.1817-11.1502
1635.7183-2.57196.73641.5136-3.08139.38241.3567-2.28460.4973-0.1458-0.06380.2543-1.3971-1.3636-1.18541.34-0.12670.48612.0759-0.28981.1296-37.8532-22.6951-6.1559
1646.43322.76532.99822.1535-1.99815.2360.2397-1.7983-0.4662-0.49010.171.95520.5264-1.1954-0.4940.8881-0.12750.07491.4168-0.06011.4643-36.1633-38.1052-10.5103
1657.3280.9931-3.72951.99794.94064.5781-1.68890.7436-1.1309-0.57620.50931.64040.2561-1.74650.96541.50430.0541-0.10331.7921-0.24261.4-8.2873-66.5763-55.4797
1668.00722.3188-5.13894.33861.51468.8681-0.6463-0.5868-0.061-1.031-0.84920.27870.0539-1.24221.23393.120.8197-0.86472.1997-0.27481.54-6.3356-66.967-61.2492
1675.6629-0.47870.29934.38580.56036.0841.8093-0.75660.04810.9079-0.32481.0793-0.107-0.2392-0.69812.78570.1962-0.66312.9682-1.82482.4103-15.7776-62.7486-64.9007
1682.69641.7367-4.61091.1164-2.97717.94080.39160.61480.9851-0.55730.56451.6393-0.3126-1.9883-0.65761.58470.0239-0.13452.6653-0.51884.8192-20.4238-57.8375-50.2939
1692.0067.36481.9763.3586-5.45868.95950.4005-0.1033-1.2133-0.466-0.90570.61592.3259-1.24310.49362.7079-0.41580.25811.7644-0.26821.8223-10.3619-65.6429-48.693
1702.0209-7.47795.83557.37390.76159.38090.34930.584-0.5785-1.5918-1.08820.7532-1.0496-1.05740.66222.97270.2040.40111.40940.28361.4863-10.3041-52.1335-49.3115
1718.1841-2.73340.56712.93883.11175.40430.01-0.6168-0.02091.34160.42670.3483-1.4021-0.2168-0.22553.62320.19620.96671.10251.7674-1.9152-4.585-57.6832-48.8413
1724.7524-3.73594.41617.96461.25768.42840.27952.03560.9421-2.02231.2201-2.3081-1.44032.299-0.80332.3046-0.07530.82212.33810.67841.91430.4081-47.1698-46.6255
1733.9745-2.4006-1.38741.95582.10143.74910.2921.0185-0.2936-0.64951.8759-1.2008-0.21210.8605-1.45092.7583-0.3737-0.44741.4533-0.50181.83030.92-55.1308-51.2376
1746.2578-4.9414-5.9783.79584.65645.66160.96670.14480.7119-0.33940.33220.24930.69231.0377-0.61532.62612.0326-0.17926.2090.83871.846516.3708-53.9832-65.7475
1751.9987-8.45072.64952.0337-2.61128.80341.06910.19432.88330.8512-0.9405-1.7774-0.8861-0.3933-0.37531.7321-0.0005-0.43783.05640.08532.325615.8023-41.7254-70.3167
1761.97383.5442.01160.94753.04169.8021-0.3743-0.64631.6649-1.56991.08270.20751.6632-1.4174-0.35881.85590.32220.19324.72431.20512.326414.1955-45.3755-62.0285
177-0.0051-0.00820.0538-0.0367-0.0232-0.0521-0.47870.9578-0.0164-1.12990.41572.2511-1.0736-1.14010.17053.1269-0.1287-0.66683.13130.37533.09210.9156-36.4541-64.7065
1782.0007-2.00091.91815.52374.71494.9592-0.69730.654-1.65410.2230.8659-0.10810.61080.886-0.08173.19890.2184-0.54712.07730.3442.984113.7189-34.8472-62.9321
1792.00833.29776.53857.20422.36643.9701-0.03550.7374-0.2308-0.94270.6694-0.23610.67170.79130.01874.0731-0.35090.95663.35052.97864.8086.723-31.8469-78.3627
1803.56696.5107-4.79841.9946-8.73326.42261.0810.86711.92940.47860.7375-0.3652-0.6038-1.0695-1.34024.476-0.730.4581.81460.52153.460915.7836-40.8786-77.1923
1816.2005-9.9548.67641.99981.99851.99-0.381-4.4482-1.67162.39750.21171.16882.2354-1.1442-0.02042.4719-0.44160.52432.31950.25942.1105-0.2852-44.5232-71.0225
1826.3737-2.639-5.39811.03482.26554.52611.5798-1.11041.28770.7273-0.8457-0.0101-0.07111.6563-0.93882.07040.79970.47013.35290.83931.53673.28-42.2717-81.0255
1830.5397-1.0590.82752.1725-1.45871.178-1.46350.93880.8418-0.7233-0.4314-0.6172-1.47490.65120.64664.9066-1.63291.1824.07711.1656-0.18528.6356-47.6402-77.519
1848.0997-9.2626-9.30392.00331.97551.99481.1393-1.1138-0.16631.29190.3507-0.00160.51810.6474-1.02672.47350.88740.97023.82031.10192.4825-0.6015-54.3496-80.4881
1852.0089-5.27914.5072.4715-2.07681.78690.08161.36470.76740.18170.3668-1.0626-1.5040.76380.11032.5068-0.0483-1.01182.89250.39651.73917.4603-52.8617-77.1041
1866.5962-6.51873.14896.7772-2.68081.96060.70720.7879-0.5802-0.27651.0486-2.852-0.73461.4803-1.11753.9119-0.2582-0.20141.4023-0.21171.5343.1418-64.7913-59.2092
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1chain 'A' and (resid 6 through 15 )A6 - 15
2X-RAY DIFFRACTION2chain 'A' and (resid 16 through 44 )A16 - 44
3X-RAY DIFFRACTION3chain 'A' and (resid 45 through 54 )A45 - 54
4X-RAY DIFFRACTION4chain 'A' and (resid 55 through 66 )A55 - 66
5X-RAY DIFFRACTION5chain 'A' and (resid 67 through 81 )A67 - 81
6X-RAY DIFFRACTION6chain 'A' and (resid 82 through 94 )A82 - 94
7X-RAY DIFFRACTION7chain 'A' and (resid 95 through 106 )A95 - 106
8X-RAY DIFFRACTION8chain 'A' and (resid 107 through 123 )A107 - 123
9X-RAY DIFFRACTION9chain 'A' and (resid 124 through 140 )A124 - 140
10X-RAY DIFFRACTION10chain 'A' and (resid 141 through 157 )A141 - 157
11X-RAY DIFFRACTION11chain 'A' and (resid 158 through 171 )A158 - 171
12X-RAY DIFFRACTION12chain 'A' and (resid 172 through 185 )A172 - 185
13X-RAY DIFFRACTION13chain 'A' and (resid 186 through 222 )A186 - 222
14X-RAY DIFFRACTION14chain 'B' and (resid 6 through 15 )B6 - 15
15X-RAY DIFFRACTION15chain 'B' and (resid 16 through 27 )B16 - 27
16X-RAY DIFFRACTION16chain 'B' and (resid 28 through 54 )B28 - 54
17X-RAY DIFFRACTION17chain 'B' and (resid 55 through 66 )B55 - 66
18X-RAY DIFFRACTION18chain 'B' and (resid 67 through 76 )B67 - 76
19X-RAY DIFFRACTION19chain 'B' and (resid 77 through 81 )B77 - 81
20X-RAY DIFFRACTION20chain 'B' and (resid 82 through 106 )B82 - 106
21X-RAY DIFFRACTION21chain 'B' and (resid 107 through 123 )B107 - 123
22X-RAY DIFFRACTION22chain 'B' and (resid 124 through 140 )B124 - 140
23X-RAY DIFFRACTION23chain 'B' and (resid 141 through 185 )B141 - 185
24X-RAY DIFFRACTION24chain 'B' and (resid 186 through 191 )B186 - 191
25X-RAY DIFFRACTION25chain 'B' and (resid 192 through 203 )B192 - 203
26X-RAY DIFFRACTION26chain 'B' and (resid 204 through 222 )B204 - 222
27X-RAY DIFFRACTION27chain 'C' and (resid 6 through 44 )C6 - 44
28X-RAY DIFFRACTION28chain 'C' and (resid 45 through 54 )C45 - 54
29X-RAY DIFFRACTION29chain 'C' and (resid 55 through 66 )C55 - 66
30X-RAY DIFFRACTION30chain 'C' and (resid 67 through 76 )C67 - 76
31X-RAY DIFFRACTION31chain 'C' and (resid 77 through 81 )C77 - 81
32X-RAY DIFFRACTION32chain 'C' and (resid 82 through 106 )C82 - 106
33X-RAY DIFFRACTION33chain 'C' and (resid 107 through 123 )C107 - 123
34X-RAY DIFFRACTION34chain 'C' and (resid 124 through 140 )C124 - 140
35X-RAY DIFFRACTION35chain 'C' and (resid 141 through 150 )C141 - 150
36X-RAY DIFFRACTION36chain 'C' and (resid 151 through 185 )C151 - 185
37X-RAY DIFFRACTION37chain 'C' and (resid 186 through 222 )C186 - 222
38X-RAY DIFFRACTION38chain 'D' and (resid 6 through 15 )D6 - 15
39X-RAY DIFFRACTION39chain 'D' and (resid 16 through 27 )D16 - 27
40X-RAY DIFFRACTION40chain 'D' and (resid 28 through 54 )D28 - 54
41X-RAY DIFFRACTION41chain 'D' and (resid 55 through 66 )D55 - 66
42X-RAY DIFFRACTION42chain 'D' and (resid 67 through 76 )D67 - 76
43X-RAY DIFFRACTION43chain 'D' and (resid 77 through 81 )D77 - 81
44X-RAY DIFFRACTION44chain 'D' and (resid 82 through 106 )D82 - 106
45X-RAY DIFFRACTION45chain 'D' and (resid 107 through 140 )D107 - 140
46X-RAY DIFFRACTION46chain 'D' and (resid 141 through 157 )D141 - 157
47X-RAY DIFFRACTION47chain 'D' and (resid 158 through 191 )D158 - 191
48X-RAY DIFFRACTION48chain 'D' and (resid 192 through 222 )D192 - 222
49X-RAY DIFFRACTION49chain 'E' and (resid 6 through 15 )E6 - 15
50X-RAY DIFFRACTION50chain 'E' and (resid 16 through 27 )E16 - 27
51X-RAY DIFFRACTION51chain 'E' and (resid 28 through 44 )E28 - 44
52X-RAY DIFFRACTION52chain 'E' and (resid 45 through 54 )E45 - 54
53X-RAY DIFFRACTION53chain 'E' and (resid 55 through 66 )E55 - 66
54X-RAY DIFFRACTION54chain 'E' and (resid 67 through 81 )E67 - 81
55X-RAY DIFFRACTION55chain 'E' and (resid 82 through 106 )E82 - 106
56X-RAY DIFFRACTION56chain 'E' and (resid 107 through 115 )E107 - 115
57X-RAY DIFFRACTION57chain 'E' and (resid 116 through 140 )E116 - 140
58X-RAY DIFFRACTION58chain 'E' and (resid 141 through 171 )E141 - 171
59X-RAY DIFFRACTION59chain 'E' and (resid 172 through 185 )E172 - 185
60X-RAY DIFFRACTION60chain 'E' and (resid 186 through 222 )E186 - 222
61X-RAY DIFFRACTION61chain 'F' and (resid 6 through 36 )F6 - 36
62X-RAY DIFFRACTION62chain 'F' and (resid 37 through 54 )F37 - 54
63X-RAY DIFFRACTION63chain 'F' and (resid 55 through 66 )F55 - 66
64X-RAY DIFFRACTION64chain 'F' and (resid 67 through 81 )F67 - 81
65X-RAY DIFFRACTION65chain 'F' and (resid 82 through 94 )F82 - 94
66X-RAY DIFFRACTION66chain 'F' and (resid 95 through 106 )F95 - 106
67X-RAY DIFFRACTION67chain 'F' and (resid 107 through 123 )F107 - 123
68X-RAY DIFFRACTION68chain 'F' and (resid 124 through 140 )F124 - 140
69X-RAY DIFFRACTION69chain 'F' and (resid 141 through 157 )F141 - 157
70X-RAY DIFFRACTION70chain 'F' and (resid 158 through 171 )F158 - 171
71X-RAY DIFFRACTION71chain 'F' and (resid 172 through 178 )F172 - 178
72X-RAY DIFFRACTION72chain 'F' and (resid 179 through 191 )F179 - 191
73X-RAY DIFFRACTION73chain 'F' and (resid 192 through 222 )F192 - 222
74X-RAY DIFFRACTION74chain 'G' and (resid 6 through 15 )G6 - 15
75X-RAY DIFFRACTION75chain 'G' and (resid 16 through 27 )G16 - 27
76X-RAY DIFFRACTION76chain 'G' and (resid 28 through 36 )G28 - 36
77X-RAY DIFFRACTION77chain 'G' and (resid 37 through 44 )G37 - 44
78X-RAY DIFFRACTION78chain 'G' and (resid 45 through 54 )G45 - 54
79X-RAY DIFFRACTION79chain 'G' and (resid 55 through 66 )G55 - 66
80X-RAY DIFFRACTION80chain 'G' and (resid 67 through 76 )G67 - 76
81X-RAY DIFFRACTION81chain 'G' and (resid 77 through 81 )G77 - 81
82X-RAY DIFFRACTION82chain 'G' and (resid 82 through 106 )G82 - 106
83X-RAY DIFFRACTION83chain 'G' and (resid 107 through 115 )G107 - 115
84X-RAY DIFFRACTION84chain 'G' and (resid 116 through 123 )G116 - 123
85X-RAY DIFFRACTION85chain 'G' and (resid 124 through 140 )G124 - 140
86X-RAY DIFFRACTION86chain 'G' and (resid 141 through 185 )G141 - 185
87X-RAY DIFFRACTION87chain 'G' and (resid 186 through 203 )G186 - 203
88X-RAY DIFFRACTION88chain 'G' and (resid 204 through 222 )G204 - 222
89X-RAY DIFFRACTION89chain 'H' and (resid 6 through 15 )H6 - 15
90X-RAY DIFFRACTION90chain 'H' and (resid 16 through 27 )H16 - 27
91X-RAY DIFFRACTION91chain 'H' and (resid 28 through 36 )H28 - 36
92X-RAY DIFFRACTION92chain 'H' and (resid 37 through 44 )H37 - 44
93X-RAY DIFFRACTION93chain 'H' and (resid 45 through 54 )H45 - 54
94X-RAY DIFFRACTION94chain 'H' and (resid 55 through 76 )H55 - 76
95X-RAY DIFFRACTION95chain 'H' and (resid 77 through 81 )H77 - 81
96X-RAY DIFFRACTION96chain 'H' and (resid 82 through 123 )H82 - 123
97X-RAY DIFFRACTION97chain 'H' and (resid 124 through 140 )H124 - 140
98X-RAY DIFFRACTION98chain 'H' and (resid 141 through 157 )H141 - 157
99X-RAY DIFFRACTION99chain 'H' and (resid 158 through 178 )H158 - 178
100X-RAY DIFFRACTION100chain 'H' and (resid 179 through 191 )H179 - 191
101X-RAY DIFFRACTION101chain 'H' and (resid 192 through 222 )H192 - 222
102X-RAY DIFFRACTION102chain 'I' and (resid 6 through 27 )I6 - 27
103X-RAY DIFFRACTION103chain 'I' and (resid 28 through 54 )I28 - 54
104X-RAY DIFFRACTION104chain 'I' and (resid 55 through 66 )I55 - 66
105X-RAY DIFFRACTION105chain 'I' and (resid 67 through 76 )I67 - 76
106X-RAY DIFFRACTION106chain 'I' and (resid 77 through 94 )I77 - 94
107X-RAY DIFFRACTION107chain 'I' and (resid 95 through 106 )I95 - 106
108X-RAY DIFFRACTION108chain 'I' and (resid 107 through 123 )I107 - 123
109X-RAY DIFFRACTION109chain 'I' and (resid 124 through 140 )I124 - 140
110X-RAY DIFFRACTION110chain 'I' and (resid 141 through 171 )I141 - 171
111X-RAY DIFFRACTION111chain 'I' and (resid 172 through 185 )I172 - 185
112X-RAY DIFFRACTION112chain 'I' and (resid 186 through 203 )I186 - 203
113X-RAY DIFFRACTION113chain 'I' and (resid 204 through 222 )I204 - 222
114X-RAY DIFFRACTION114chain 'J' and (resid 6 through 15 )J6 - 15
115X-RAY DIFFRACTION115chain 'J' and (resid 16 through 27 )J16 - 27
116X-RAY DIFFRACTION116chain 'J' and (resid 28 through 36 )J28 - 36
117X-RAY DIFFRACTION117chain 'J' and (resid 37 through 44 )J37 - 44
118X-RAY DIFFRACTION118chain 'J' and (resid 45 through 54 )J45 - 54
119X-RAY DIFFRACTION119chain 'J' and (resid 55 through 66 )J55 - 66
120X-RAY DIFFRACTION120chain 'J' and (resid 67 through 76 )J67 - 76
121X-RAY DIFFRACTION121chain 'J' and (resid 77 through 94 )J77 - 94
122X-RAY DIFFRACTION122chain 'J' and (resid 95 through 106 )J95 - 106
123X-RAY DIFFRACTION123chain 'J' and (resid 107 through 123 )J107 - 123
124X-RAY DIFFRACTION124chain 'J' and (resid 124 through 140 )J124 - 140
125X-RAY DIFFRACTION125chain 'J' and (resid 141 through 157 )J141 - 157
126X-RAY DIFFRACTION126chain 'J' and (resid 158 through 191 )J158 - 191
127X-RAY DIFFRACTION127chain 'J' and (resid 192 through 203 )J192 - 203
128X-RAY DIFFRACTION128chain 'J' and (resid 204 through 222 )J204 - 222
129X-RAY DIFFRACTION129chain 'K' and (resid 6 through 27 )K6 - 27
130X-RAY DIFFRACTION130chain 'K' and (resid 28 through 106 )K28 - 106
131X-RAY DIFFRACTION131chain 'K' and (resid 107 through 123 )K107 - 123
132X-RAY DIFFRACTION132chain 'K' and (resid 124 through 140 )K124 - 140
133X-RAY DIFFRACTION133chain 'L' and (resid 6 through 15 )L6 - 15
134X-RAY DIFFRACTION134chain 'L' and (resid 16 through 36 )L16 - 36
135X-RAY DIFFRACTION135chain 'L' and (resid 37 through 66 )L37 - 66
136X-RAY DIFFRACTION136chain 'L' and (resid 67 through 81 )L67 - 81
137X-RAY DIFFRACTION137chain 'L' and (resid 82 through 106 )L82 - 106
138X-RAY DIFFRACTION138chain 'L' and (resid 107 through 115 )L107 - 115
139X-RAY DIFFRACTION139chain 'L' and (resid 116 through 126 )L116 - 126
140X-RAY DIFFRACTION140chain 'L' and (resid 127 through 133 )L127 - 133
141X-RAY DIFFRACTION141chain 'L' and (resid 134 through 140 )L134 - 140
142X-RAY DIFFRACTION142chain 'M' and (resid 6 through 15 )M6 - 15
143X-RAY DIFFRACTION143chain 'M' and (resid 16 through 44 )M16 - 44
144X-RAY DIFFRACTION144chain 'M' and (resid 45 through 54 )M45 - 54
145X-RAY DIFFRACTION145chain 'M' and (resid 55 through 66 )M55 - 66
146X-RAY DIFFRACTION146chain 'M' and (resid 67 through 76 )M67 - 76
147X-RAY DIFFRACTION147chain 'M' and (resid 77 through 94 )M77 - 94
148X-RAY DIFFRACTION148chain 'M' and (resid 95 through 106 )M95 - 106
149X-RAY DIFFRACTION149chain 'M' and (resid 107 through 115 )M107 - 115
150X-RAY DIFFRACTION150chain 'M' and (resid 116 through 140 )M116 - 140
151X-RAY DIFFRACTION151chain 'M' and (resid 141 through 162 )M141 - 162
152X-RAY DIFFRACTION152chain 'M' and (resid 163 through 171 )M163 - 171
153X-RAY DIFFRACTION153chain 'M' and (resid 172 through 178 )M172 - 178
154X-RAY DIFFRACTION154chain 'M' and (resid 179 through 203 )M179 - 203
155X-RAY DIFFRACTION155chain 'M' and (resid 204 through 222 )M204 - 222
156X-RAY DIFFRACTION156chain 'N' and (resid 6 through 81 )N6 - 81
157X-RAY DIFFRACTION157chain 'N' and (resid 82 through 94 )N82 - 94
158X-RAY DIFFRACTION158chain 'N' and (resid 95 through 123 )N95 - 123
159X-RAY DIFFRACTION159chain 'N' and (resid 124 through 140 )N124 - 140
160X-RAY DIFFRACTION160chain 'N' and (resid 141 through 157 )N141 - 157
161X-RAY DIFFRACTION161chain 'N' and (resid 158 through 185 )N158 - 185
162X-RAY DIFFRACTION162chain 'N' and (resid 186 through 191 )N186 - 191
163X-RAY DIFFRACTION163chain 'N' and (resid 192 through 203 )N192 - 203
164X-RAY DIFFRACTION164chain 'N' and (resid 204 through 222 )N204 - 222
165X-RAY DIFFRACTION165chain 'O' and (resid 6 through 15 )O6 - 15
166X-RAY DIFFRACTION166chain 'O' and (resid 16 through 36 )O16 - 36
167X-RAY DIFFRACTION167chain 'O' and (resid 37 through 54 )O37 - 54
168X-RAY DIFFRACTION168chain 'O' and (resid 55 through 66 )O55 - 66
169X-RAY DIFFRACTION169chain 'O' and (resid 67 through 76 )O67 - 76
170X-RAY DIFFRACTION170chain 'O' and (resid 77 through 94 )O77 - 94
171X-RAY DIFFRACTION171chain 'O' and (resid 95 through 106 )O95 - 106
172X-RAY DIFFRACTION172chain 'O' and (resid 107 through 115 )O107 - 115
173X-RAY DIFFRACTION173chain 'O' and (resid 116 through 125 )O116 - 125
174X-RAY DIFFRACTION174chain 'O' and (resid 126 through 140 )O126 - 140
175X-RAY DIFFRACTION175chain 'P' and (resid 6 through 15 )P6 - 15
176X-RAY DIFFRACTION176chain 'P' and (resid 16 through 27 )P16 - 27
177X-RAY DIFFRACTION177chain 'P' and (resid 28 through 44 )P28 - 44
178X-RAY DIFFRACTION178chain 'P' and (resid 45 through 54 )P45 - 54
179X-RAY DIFFRACTION179chain 'P' and (resid 55 through 66 )P55 - 66
180X-RAY DIFFRACTION180chain 'P' and (resid 67 through 76 )P67 - 76
181X-RAY DIFFRACTION181chain 'P' and (resid 77 through 81 )P77 - 81
182X-RAY DIFFRACTION182chain 'P' and (resid 82 through 94 )P82 - 94
183X-RAY DIFFRACTION183chain 'P' and (resid 95 through 106 )P95 - 106
184X-RAY DIFFRACTION184chain 'P' and (resid 107 through 115 )P107 - 115
185X-RAY DIFFRACTION185chain 'P' and (resid 116 through 123 )P116 - 123
186X-RAY DIFFRACTION186chain 'P' and (resid 124 through 140 )P124 - 140

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万見について

-
お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る