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- PDB-6qh2: Solution NMR ensemble for a chimeric KH-S1 domain construct of ex... -
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Open data
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Basic information
Entry | Database: PDB / ID: 6qh2 | ||||||
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Title | Solution NMR ensemble for a chimeric KH-S1 domain construct of exosomal polynucleotide phosphrylase at 298K compiled using the CoMAND method | ||||||
![]() | Polyribonucleotide nucleotidyltransferase | ||||||
![]() | SIGNALING PROTEIN / CoMAND method / R-factor refinement / PHOSPHATASE | ||||||
Function / homology | ![]() polyribonucleotide nucleotidyltransferase / polyribonucleotide nucleotidyltransferase activity / mRNA catabolic process / RNA processing / magnesium ion binding / RNA binding / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | SOLUTION NMR / R-factor based frame picking | ||||||
![]() | ElGamacy, M. / Truffault, V. / Zhu, H. / Coles, M. | ||||||
![]() | ![]() Title: Mapping Local Conformational Landscapes of Proteins in Solution. Authors: ElGamacy, M. / Riss, M. / Zhu, H. / Truffault, V. / Coles, M. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 872.7 KB | Display | ![]() |
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PDB format | ![]() | 730.9 KB | Display | ![]() |
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-Validation report
Summary document | ![]() | 417.1 KB | Display | ![]() |
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Full document | ![]() | 540.5 KB | Display | |
Data in XML | ![]() | 59.5 KB | Display | |
Data in CIF | ![]() | 80.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6qf8C ![]() 6qfpC C: citing same article ( |
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Similar structure data | |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein | Mass: 18396.865 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Strain: SE11 / Gene: pnp, ECSE_3450 / Production host: ![]() ![]() References: UniProt: B6I1N9, polyribonucleotide nucleotidyltransferase |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Type: solution Contents: 0.4 mM [U-99% 13C; U-99% 15N] KH-S1, 50 mM potassium phosphate, 100 mM sodium chloride, 90% H2O/10% D2O Label: double-labelled / Solvent system: 90% H2O/10% D2O | ||||||||||||||||||||
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Sample |
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Sample conditions | Ionic strength: 125 mM / Label: conditions_1 / pH: 7.5 / Pressure: ambient atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: R-factor based frame picking / Software ordinal: 6 Details: frames picked from unrestrained MD simulations to minimise overall CNH-NOESY based R-Factors | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: back calculated data agree with experimental NOESY spectrum Conformers calculated total number: 10000 / Conformers submitted total number: 20 |