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Yorodumi- PDB-6p64: Alpha-beta TCR Binding to Neoantigen KQWLVWLFL Presented by HLA-A206 -
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Open data
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Basic information
| Entry | Database: PDB / ID: 6p64 | ||||||
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| Title | Alpha-beta TCR Binding to Neoantigen KQWLVWLFL Presented by HLA-A206 | ||||||
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Keywords | IMMUNE SYSTEM / Neoantigen / Peptide/MHC / T Cell Receptor | ||||||
| Function / homology | Function and homology informationN-terminal peptidyl-L-cysteine N-palmitoylation / O-acyltransferase activity / HHAT G278V doesn't palmitoylate Hh-Np / palmitoyltransferase activity / smoothened signaling pathway / antigen processing and presentation of peptide antigen via MHC class I / Transferases; Acyltransferases; Transferring groups other than aminoacyl groups / negative regulation of receptor binding / early endosome lumen / Nef mediated downregulation of MHC class I complex cell surface expression ...N-terminal peptidyl-L-cysteine N-palmitoylation / O-acyltransferase activity / HHAT G278V doesn't palmitoylate Hh-Np / palmitoyltransferase activity / smoothened signaling pathway / antigen processing and presentation of peptide antigen via MHC class I / Transferases; Acyltransferases; Transferring groups other than aminoacyl groups / negative regulation of receptor binding / early endosome lumen / Nef mediated downregulation of MHC class I complex cell surface expression / DAP12 interactions / transferrin transport / cellular response to iron ion / Endosomal/Vacuolar pathway / lumenal side of endoplasmic reticulum membrane / Antigen Presentation: Folding, assembly and peptide loading of class I MHC / peptide antigen assembly with MHC class II protein complex / cellular response to iron(III) ion / MHC class II protein complex / negative regulation of forebrain neuron differentiation / antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent / Hedgehog ligand biogenesis / ER to Golgi transport vesicle membrane / peptide antigen assembly with MHC class I protein complex / regulation of iron ion transport / regulation of erythrocyte differentiation / HFE-transferrin receptor complex / response to molecule of bacterial origin / MHC class I peptide loading complex / T cell mediated cytotoxicity / positive regulation of T cell cytokine production / antigen processing and presentation of endogenous peptide antigen via MHC class I / antigen processing and presentation of exogenous peptide antigen via MHC class II / positive regulation of immune response / MHC class I protein complex / positive regulation of T cell activation / peptide antigen binding / positive regulation of receptor-mediated endocytosis / negative regulation of neurogenesis / cellular response to nicotine / positive regulation of T cell mediated cytotoxicity / multicellular organismal-level iron ion homeostasis / specific granule lumen / phagocytic vesicle membrane / recycling endosome membrane / Interferon gamma signaling / Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell / negative regulation of epithelial cell proliferation / MHC class II protein complex binding / Modulation by Mtb of host immune system / late endosome membrane / sensory perception of smell / positive regulation of cellular senescence / tertiary granule lumen / DAP12 signaling / T cell differentiation in thymus / negative regulation of neuron projection development / ER-Phagosome pathway / protein refolding / early endosome membrane / protein homotetramerization / amyloid fibril formation / intracellular iron ion homeostasis / learning or memory / immune response / endoplasmic reticulum lumen / Amyloid fiber formation / Golgi membrane / lysosomal membrane / external side of plasma membrane / focal adhesion / Neutrophil degranulation / endoplasmic reticulum membrane / GTP binding / SARS-CoV-2 activates/modulates innate and adaptive immune responses / structural molecule activity / cell surface / endoplasmic reticulum / Golgi apparatus / protein homodimerization activity / extracellular space / extracellular exosome / extracellular region / metal ion binding / identical protein binding / membrane / plasma membrane / cytosol Similarity search - Function | ||||||
| Biological species | Homo sapiens (human) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.05 Å | ||||||
Authors | Devlin, J.R. / Baker, B.M. | ||||||
| Funding support | United States, 1items
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Citation | Journal: To be PublishedTitle: A T cell receptor peptide/MHC complex at 3.05 Angstrom resolution Authors: Devlin, J.R. / Baker, B.M. / Harari, A. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 6p64.cif.gz | 757.6 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb6p64.ent.gz | 561.2 KB | Display | PDB format |
| PDBx/mmJSON format | 6p64.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 6p64_validation.pdf.gz | 484.3 KB | Display | wwPDB validaton report |
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| Full document | 6p64_full_validation.pdf.gz | 494.1 KB | Display | |
| Data in XML | 6p64_validation.xml.gz | 55 KB | Display | |
| Data in CIF | 6p64_validation.cif.gz | 74.2 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/p6/6p64 ftp://data.pdbj.org/pub/pdb/validation_reports/p6/6p64 | HTTPS FTP |
-Related structure data
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Assembly
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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About Yorodumi



Homo sapiens (human)
X-RAY DIFFRACTION
United States, 1items
Citation






















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