- PDB-6olu: RIAM RA-PH core structure in the P212121 space group -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 6olu
Title
RIAM RA-PH core structure in the P212121 space group
Components
Amyloid beta A4 precursor protein-binding family B member 1-interacting protein
Keywords
SIGNALING PROTEIN / RAP1 Effector RA-PH
Function / homology
Function and homology information
GRB2:SOS provides linkage to MAPK signaling for Integrins / Integrin signaling / T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell / p130Cas linkage to MAPK signaling for integrins / MAP2K and MAPK activation / T cell receptor complex / positive regulation of cell adhesion / lamellipodium / cytoskeleton / focal adhesion ...GRB2:SOS provides linkage to MAPK signaling for Integrins / Integrin signaling / T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell / p130Cas linkage to MAPK signaling for integrins / MAP2K and MAPK activation / T cell receptor complex / positive regulation of cell adhesion / lamellipodium / cytoskeleton / focal adhesion / signal transduction / plasma membrane / cytosol Similarity search - Function
Type: MAR CCD 165 mm / Detector: CCD / Date: Apr 21, 2011
Radiation
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 0.9791 Å / Relative weight: 1
Reflection
Resolution: 1.9→50 Å / Num. obs: 24074 / % possible obs: 98 % / Redundancy: 3.2 % / Net I/σ(I): 2
Reflection shell
Resolution: 1.9→1.93 Å / Num. unique obs: 1111
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Processing
Software
Name
Version
Classification
REFMAC
5.8.0135
refinement
HKL-2000
datareduction
HKL-2000
datascaling
MOLREP
phasing
Refinement
Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 1.9→35.7 Å / Cor.coef. Fo:Fc: 0.935 / Cor.coef. Fo:Fc free: 0.909 / SU B: 3.739 / SU ML: 0.11 / Cross valid method: THROUGHOUT / ESU R: 0.205 / ESU R Free: 0.18 / Details: HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2556
1081
5.2 %
RANDOM
Rwork
0.21241
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obs
0.21468
19675
84.51 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å