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Open data
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Basic information
Entry | Database: PDB / ID: 6nre | ||||||
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Title | Monomeric Lipocalin Can F 6 | ||||||
![]() | Lipocalin-Can f 6 allergen | ||||||
![]() | ALLERGEN / Lipocalin / metabolic role | ||||||
Function / homology | ![]() odorant binding / small molecule binding / extracellular space / extracellular region Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() ![]() | ||||||
![]() | Clayton G, M. / Kappler J, W. / Chan, S. | ||||||
![]() | ![]() Title: Structural characteristics of lipocalin allergens: Crystal structure of the immunogenic dog allergen Can f 6. Authors: Clayton, G.M. / White, J. / Lee, S. / Kappler, J.W. / Chan, S.K. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 41.2 KB | Display | ![]() |
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PDB format | ![]() | 30.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 415 KB | Display | ![]() |
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Full document | ![]() | 416.6 KB | Display | |
Data in XML | ![]() | 8.1 KB | Display | |
Data in CIF | ![]() | 9.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 21046.691 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.24 Å3/Da / Density % sol: 45.13 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 4.5 Details: 2-propanol, sodium acetate, polyethylene glycol ether 550 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M-F / Detector: PIXEL / Date: Jul 27, 2018 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9791 Å / Relative weight: 1 |
Reflection | Resolution: 2.06→72.49 Å / Num. obs: 12122 / % possible obs: 99.4 % / Redundancy: 17 % / CC1/2: 0.985 / Rmerge(I) obs: 0.051 / Rpim(I) all: 0.012 / Rrim(I) all: 0.052 / Net I/σ(I): 38.8 / Num. measured all: 69256 / Scaling rejects: 94 |
Reflection shell | Resolution: 2.06→2.11 Å / Redundancy: 4.9 % / Rmerge(I) obs: 0.412 / Mean I/σ(I) obs: 3.3 / Num. measured all: 5492 / Num. unique obs: 872 / Rpim(I) all: 0.194 / Rrim(I) all: 0.457 / Net I/σ(I) obs: 0.1 / % possible all: 93 |
-Phasing
Phasing | Method: ![]() |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.06→58.16 Å
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Refine LS restraints |
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LS refinement shell |
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