- PDB-6l6o: Crystal structure of stabilized Rab5a GTPase domain from Leishman... -
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Basic information
Entry
Database: PDB / ID: 6l6o
Title
Crystal structure of stabilized Rab5a GTPase domain from Leishmania donovani
Components
Rab5a
Keywords
ENDOCYTOSIS / Intracellular trafficking / GTPase
Function / homology
Function and homology information
vesicle-mediated transport / endosome / GTPase activity / GTP binding / metal ion binding Similarity search - Function
: / Sigma-54 interaction domain ATP-binding region A signature. / Sigma-54 interaction domain, ATP-binding site 1 / small GTPase Rab1 family profile. / small GTPase Rho family profile. / small GTPase Ras family profile. / Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases / Rho (Ras homology) subfamily of Ras-like small GTPases / Ras subfamily of RAS small GTPases / Small GTPase ...: / Sigma-54 interaction domain ATP-binding region A signature. / Sigma-54 interaction domain, ATP-binding site 1 / small GTPase Rab1 family profile. / small GTPase Rho family profile. / small GTPase Ras family profile. / Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases / Rho (Ras homology) subfamily of Ras-like small GTPases / Ras subfamily of RAS small GTPases / Small GTPase / Ras family / Rab subfamily of small GTPases / Small GTP-binding protein domain / P-loop containing nucleoside triphosphate hydrolase Similarity search - Domain/homology
Resolution: 1.8→24.42 Å / Cor.coef. Fo:Fc: 0.973 / Cor.coef. Fo:Fc free: 0.96 / SU B: 5.151 / SU ML: 0.079 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.104 / ESU R Free: 0.106 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2031
938
4.9 %
RANDOM
Rwork
0.165
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obs
0.1669
18075
98.75 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK
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