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Open data
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Basic information
Entry | Database: PDB / ID: 6j0d | ||||||
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Title | Crystal structure of OsSUF4 | ||||||
![]() | transcription factor | ||||||
![]() | TRANSCRIPTION / transcription factor | ||||||
Function / homology | ![]() regulation of DNA-templated transcription / DNA binding / nucleus / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Wang, B. / Luo, Q. | ||||||
![]() | ![]() Title: The transcription factor OsSUF4 interacts with SDG725 in promoting H3K36me3 establishment. Authors: Liu, B. / Liu, Y. / Wang, B. / Luo, Q. / Shi, J. / Gan, J. / Shen, W.H. / Yu, Y. / Dong, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 28.2 KB | Display | ![]() |
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PDB format | ![]() | 20.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.2 MB | Display | ![]() |
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Full document | ![]() | 1.2 MB | Display | |
Data in XML | ![]() | 5.9 KB | Display | |
Data in CIF | ![]() | 7.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 11171.574 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Production host: ![]() ![]() | ||
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#2: Chemical | #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.31 Å3/Da / Density % sol: 46.84 % |
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Crystal grow | Temperature: 291 K / Method: vapor diffusion, hanging drop / Details: Hepes pH7.0,PEG6000 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Apr 7, 2018 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97918 Å / Relative weight: 1 |
Reflection | Resolution: 1.9→52.34 Å / Num. obs: 8598 / % possible obs: 99.9 % / Redundancy: 10.3 % / CC1/2: 0.998 / Rmerge(I) obs: 0.136 / Net I/σ(I): 24.7 |
Reflection shell | Resolution: 1.9→1.97 Å / CC1/2: 0.831 |
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Processing
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Refinement | Method to determine structure: ![]() Details: SF FILE CONTAINS FRIEDEL PAIRS UNDER I/F_MINUS AND I/F_PLUS COLUMNS. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 24.294 Å2
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Refinement step | Cycle: 1 / Resolution: 1.9→52.34 Å
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Refine LS restraints |
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