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- PDB-6hee: Crystal structure of Extracellular Domain 1 (ECD1) of FtsX from S... -
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Open data
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Basic information
Entry | Database: PDB / ID: 6hee | ||||||
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Title | Crystal structure of Extracellular Domain 1 (ECD1) of FtsX from S. pneumonie in complex with undecyl-maltoside | ||||||
![]() | Cell division protein FtsX | ||||||
![]() | CELL CYCLE / cell division / MEMBRANE PROTEIN | ||||||
Function / homology | ![]() | ||||||
Biological species | Streptococcus pneumoniae serotype 2 | ||||||
Method | ![]() ![]() | ||||||
![]() | Martinez-Caballero, S. / Alcorlo-Pages, M. / Hermoso, J.A. | ||||||
![]() | ![]() Title: Structure of the Large Extracellular Loop of FtsX and Its Interaction with the Essential Peptidoglycan Hydrolase PcsB in Streptococcus pneumoniae. Authors: Rued, B.E. / Alcorlo, M. / Edmonds, K.A. / Martinez-Caballero, S. / Straume, D. / Fu, Y. / Bruce, K.E. / Wu, H. / Havarstein, L.S. / Hermoso, J.A. / Winkler, M.E. / Giedroc, D.P. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 59.6 KB | Display | ![]() |
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PDB format | ![]() | 42.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 618.6 KB | Display | ![]() |
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Full document | ![]() | 625.9 KB | Display | |
Data in XML | ![]() | 11.5 KB | Display | |
Data in CIF | ![]() | 14.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6he6SC ![]() 6hfxC ![]() 6mk7C S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 |
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Unit cell |
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Components
#1: Protein | Mass: 13325.637 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Strain: D39 / NCTC 7466 / Gene: ftsX, SPD_0660 / Production host: ![]() ![]() #2: Chemical | ChemComp-UMQ / | #3: Chemical | ChemComp-SO4 / | #4: Chemical | ChemComp-TRS / | #5: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.57 Å3/Da / Density % sol: 65.5 % |
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Crystal grow | Temperature: 291.15 K / Method: vapor diffusion, sitting drop Details: ammonium sulfate, sodium and potassium tartrate and sodium citrate |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Sep 13, 2016 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97934 Å / Relative weight: 1 |
Reflection | Resolution: 2.3→42.31 Å / Num. obs: 17731 / % possible obs: 98.89 % / Redundancy: 22.1 % / Rpim(I) all: 0.004 / Net I/σ(I): 44.14 |
Reflection shell | Resolution: 2.3→2.38 Å / Rpim(I) all: 0.092 |
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Processing
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Refinement | Starting model: 6HE6 Resolution: 2.3→42.31 Å / SU ML: 0.34 / Cross valid method: THROUGHOUT / σ(F): 1.34 / Phase error: 34.18
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.3→42.31 Å
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Refine LS restraints |
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LS refinement shell |
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