+Open data
-Basic information
Entry | Database: PDB / ID: 6gz7 | ||||||||||||||||||||
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Title | Polyamide - DNA complex NMR structure | ||||||||||||||||||||
Components | DNA (5'-D(*Keywords | UNKNOWN FUNCTION / Polyamide DNA complex | Function / homology | Chem-FGW / DNA / DNA (> 10) | Function and homology information Biological species | synthetic construct (others) | Method | SOLUTION NMR / molecular dynamics | Authors | Aman, K. | Citation | Journal: Chemistry / Year: 2019 | Title: Structural and Kinetic Profiling of Allosteric Modulation of Duplex DNA Induced by DNA-Binding Polyamide Analogues. Authors: Aman, K. / Padroni, G. / Parkinson, J.A. / Welte, T. / Burley, G.A. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6gz7.cif.gz | 209.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6gz7.ent.gz | 168.8 KB | Display | PDB format |
PDBx/mmJSON format | 6gz7.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6gz7_validation.pdf.gz | 282.3 KB | Display | wwPDB validaton report |
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Full document | 6gz7_full_validation.pdf.gz | 409.7 KB | Display | |
Data in XML | 6gz7_validation.xml.gz | 12.4 KB | Display | |
Data in CIF | 6gz7_validation.cif.gz | 18.2 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/gz/6gz7 ftp://data.pdbj.org/pub/pdb/validation_reports/gz/6gz7 | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 3940.603 Da / Num. of mol.: 2 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) #2: Chemical | ChemComp-FGW / | |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength units: Not defined / Label: PA-ODN1 complex conditions / pH: 7.4 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE II / Manufacturer: Bruker / Model: AVANCE II / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: molecular dynamics / Software ordinal: 2 Details: the structures are based on a total of 310 NOE distance restraints | |||||||||||||||
NMR representative | Selection criteria: minimized average structure | |||||||||||||||
NMR ensemble | Conformer selection criteria: all calculated structures submitted Conformers calculated total number: 11 / Conformers submitted total number: 11 |