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Yorodumi- PDB-6g9r: Murine class I major histocompatibility complex H-2 Db in complex... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6g9r | ||||||
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Title | Murine class I major histocompatibility complex H-2 Db in complex with self-antigen derived from dopamine monooxygenase. | ||||||
Components |
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Keywords | IMMUNE SYSTEM / LCMV / cross-reactivity / MHC class I / TCR / APL | ||||||
Function / homology | Function and homology information regulation of vascular associated smooth muscle cell proliferation / Catecholamine biosynthesis / octopamine metabolic process / dopamine beta-monooxygenase / leukocyte mediated immunity / dopamine beta-monooxygenase activity / octopamine biosynthetic process / homoiothermy / regulation of vascular endothelial cell proliferation / chromaffin granule lumen ...regulation of vascular associated smooth muscle cell proliferation / Catecholamine biosynthesis / octopamine metabolic process / dopamine beta-monooxygenase / leukocyte mediated immunity / dopamine beta-monooxygenase activity / octopamine biosynthetic process / homoiothermy / regulation of vascular endothelial cell proliferation / chromaffin granule lumen / regulation of extrinsic apoptotic signaling pathway / norepinephrine biosynthetic process / varicosity / chromaffin granule membrane / behavioral response to ethanol / dopamine catabolic process / maternal behavior / fear response / vasoconstriction / L-ascorbic acid binding / Endosomal/Vacuolar pathway / DAP12 interactions / Antigen Presentation: Folding, assembly and peptide loading of class I MHC / ER-Phagosome pathway / DAP12 signaling / Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell / transport vesicle membrane / response to pain / leukocyte migration / associative learning / antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent / centriolar satellite / blood vessel remodeling / beta-2-microglobulin binding / cellular defense response / positive regulation of vasoconstriction / response to amphetamine / Neutrophil degranulation / secretory granule membrane / locomotory behavior / antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent / antigen processing and presentation of endogenous peptide antigen via MHC class Ib / lumenal side of endoplasmic reticulum membrane / peptide binding / cellular response to iron(III) ion / antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent / negative regulation of forebrain neuron differentiation / visual learning / regulation of erythrocyte differentiation / peptide antigen assembly with MHC class I protein complex / regulation of iron ion transport / response to molecule of bacterial origin / MHC class I peptide loading complex / HFE-transferrin receptor complex / T cell mediated cytotoxicity / terminal bouton / antigen processing and presentation of endogenous peptide antigen via MHC class I / positive regulation of T cell cytokine production / memory / MHC class I protein complex / multicellular organismal-level iron ion homeostasis / negative regulation of neurogenesis / peptide antigen assembly with MHC class II protein complex / positive regulation of receptor-mediated endocytosis / MHC class II protein complex / cellular response to nicotine / positive regulation of T cell mediated cytotoxicity / phagocytic vesicle membrane / positive regulation of cellular senescence / peptide antigen binding / negative regulation of epithelial cell proliferation / antigen processing and presentation of exogenous peptide antigen via MHC class II / positive regulation of immune response / sensory perception of smell / positive regulation of T cell activation / apical part of cell / negative regulation of neuron projection development / MHC class II protein complex binding / glucose homeostasis / late endosome membrane / positive regulation of cold-induced thermogenesis / iron ion transport / T cell differentiation in thymus / cytoplasmic vesicle / protein refolding / protein homotetramerization / secretory granule lumen / intracellular iron ion homeostasis / amyloid fibril formation / learning or memory / immune response / copper ion binding / lysosomal membrane / external side of plasma membrane / axon / intracellular membrane-bounded organelle / signaling receptor binding / neuronal cell body / synapse / dendrite Similarity search - Function | ||||||
Biological species | Mus musculus (house mouse) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.7 Å | ||||||
Authors | Achour, A. / Sandalova, T. / Allerbring, E. | ||||||
Citation | Journal: to be published Title: Structural basis for CD8+ T cells auto-reactivity in LCMV infection Authors: Allerbring, E. / Duru, A.D. / Nygren, P.A. / Sandalova, T. / Achour, A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6g9r.cif.gz | 318.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6g9r.ent.gz | 260.6 KB | Display | PDB format |
PDBx/mmJSON format | 6g9r.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6g9r_validation.pdf.gz | 500.6 KB | Display | wwPDB validaton report |
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Full document | 6g9r_full_validation.pdf.gz | 519.5 KB | Display | |
Data in XML | 6g9r_validation.xml.gz | 52.7 KB | Display | |
Data in CIF | 6g9r_validation.cif.gz | 71.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/g9/6g9r ftp://data.pdbj.org/pub/pdb/validation_reports/g9/6g9r | HTTPS FTP |
-Related structure data
Related structure data | 6g9qC 1s7uS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
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-Assembly
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Component-ID: _ / Refine code: _
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