登録情報 データベース : PDB / ID : 6fu3 構造の表示 ダウンロードとリンクタイトル Structure of the mixed-valence, active form, of cytochrome c peroxidase from obligate human pathogenic bacterium Neisseria gonorrhoeae 要素Protein CcpR 詳細 キーワード ELECTRON TRANSPORT / Neisseria gonorrhoeae / bacterial peroxidase / ROS detoxification機能・相同性 機能・相同性情報分子機能 ドメイン・相同性 構成要素
cytochrome-c peroxidase / cytochrome-c peroxidase activity / peroxidase activity / periplasmic space / electron transfer activity / heme binding / metal ion binding 類似検索 - 分子機能 Di-c-type haem protein, MauG/cytochrome c peroxidase / Di-haem cytochrome c peroxidase / Di-haem cytochrome c peroxidase / Cytochrome c / Cytochrome c-like domain / Cytochrome Bc1 Complex; Chain D, domain 2 / Cytochrome c family profile. / Cytochrome c-like domain / Cytochrome c-like domain superfamily / Prokaryotic membrane lipoprotein lipid attachment site profile. ... Di-c-type haem protein, MauG/cytochrome c peroxidase / Di-haem cytochrome c peroxidase / Di-haem cytochrome c peroxidase / Cytochrome c / Cytochrome c-like domain / Cytochrome Bc1 Complex; Chain D, domain 2 / Cytochrome c family profile. / Cytochrome c-like domain / Cytochrome c-like domain superfamily / Prokaryotic membrane lipoprotein lipid attachment site profile. / Orthogonal Bundle / Mainly Alpha 類似検索 - ドメイン・相同性 HEME C / Protein CcpR / Cytochrome C peroxidase 類似検索 - 構成要素生物種 Neisseria gonorrhoeae (淋菌)手法 X線回折 / 分子置換 / 解像度 : 1.8 Å 詳細データ登録者 Carvalho, A.L. / Romao, M.J. / Pauleta, S. / Nobrega, C. 資金援助 ポルトガル, 2件 詳細 詳細を隠す組織 認可番号 国 Fundacao para a Ciencia e a Tecnologia RECI/BBB-BEP/0124/2012 ポルトガル Fundacao para a Ciencia e a Tecnologia PTDC/BBB-BQB/29442/2017 ポルトガル
引用ジャーナル : To Be Published タイトル : Structure of the mixed-valence, active form, of cytochrome c peroxidase from obligate human pathogenic bacterium Neisseria gonorrhoeae著者 : Carvalho, A.L. / Romao, M.J. / Pauleta, S. / Nobrega, C. 履歴 登録 2018年2月26日 登録サイト : PDBE / 処理サイト : PDBE改定 1.0 2019年3月13日 Provider : repository / タイプ : Initial release改定 2.0 2022年7月20日 Group : Advisory / Atomic model ... Advisory / Atomic model / Author supporting evidence / Data collection / Database references / Derived calculations / Other / Refinement description / Structure summary カテゴリ : atom_site / atom_site_anisotrop ... atom_site / atom_site_anisotrop / atom_sites / database_2 / diffrn / entity / pdbx_audit_support / pdbx_contact_author / pdbx_entity_instance_feature / pdbx_entry_details / pdbx_nonpoly_scheme / pdbx_refine_tls / pdbx_refine_tls_group / pdbx_struct_assembly / pdbx_struct_assembly_prop / pdbx_struct_conn_angle / pdbx_validate_close_contact / pdbx_validate_rmsd_angle / pdbx_validate_rmsd_bond / pdbx_validate_torsion / refine / refine_hist / refine_ls_restr / refine_ls_restr_ncs / refine_ls_shell / reflns_shell / software / struct_conf / struct_conn / struct_conn_type / struct_mon_prot_cis / struct_ncs_dom / struct_ncs_dom_lim / struct_site / struct_site_gen Item : _atom_sites.fract_transf_matrix[2][1] / _atom_sites.fract_transf_matrix[3][2] ... _atom_sites.fract_transf_matrix[2][1] / _atom_sites.fract_transf_matrix[3][2] / _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _diffrn.pdbx_serial_crystal_experiment / _entity.pdbx_number_of_molecules / _pdbx_struct_assembly.details / _pdbx_struct_assembly.method_details / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.value / _refine.B_iso_mean / _refine.aniso_B[1][1] / _refine.aniso_B[1][2] / _refine.aniso_B[1][3] / _refine.aniso_B[2][2] / _refine.aniso_B[2][3] / _refine.aniso_B[3][3] / _refine.correlation_coeff_Fo_to_Fc / _refine.correlation_coeff_Fo_to_Fc_free / _refine.details / _refine.ls_R_factor_R_free / _refine.ls_R_factor_R_work / _refine.ls_R_factor_obs / _refine.ls_d_res_low / _refine.overall_SU_B / _refine.overall_SU_ML / _refine.pdbx_overall_ESU_R / _refine.pdbx_overall_ESU_R_Free / _refine.pdbx_solvent_vdw_probe_radii / _refine_hist.cycle_id / _refine_hist.d_res_low / _refine_hist.number_atoms_solvent / _refine_hist.number_atoms_total / _refine_ls_shell.R_factor_R_free / _refine_ls_shell.R_factor_R_work / _reflns_shell.d_res_low / _reflns_shell.number_unique_obs / _software.version / _struct_conn_type.id / _struct_mon_prot_cis.pdbx_omega_angle 解説 : Ligand geometry詳細 : A LINK instruction was added to the coordinate file to assure covalent binding of the type c heme to the protein. A final refinement step was performed using PDB-REDO.Provider : author / タイプ : Coordinate replacement改定 2.1 2024年1月17日 Group : Data collection / Refinement descriptionカテゴリ : chem_comp_atom / chem_comp_bond / pdbx_initial_refinement_model
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