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Open data
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Basic information
Entry | Database: PDB / ID: 6ffr | ||||||||||||||||||||
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Title | DNA-RNA Hybrid Quadruplex with Flipped Tetrad | ||||||||||||||||||||
![]() | DNA/RNA (5'-R(*![]() DNA-RNA HYBRID / quadruplex | Function / homology | DNA/RNA hybrid / DNA/RNA hybrid (> 10) | ![]() Biological species | synthetic construct (others) | Method | SOLUTION NMR / DGSA-distance geometry simulated annealing / simulated annealing | ![]() Haase, L. / Dickerhoff, J. / Weisz, K. | ![]() ![]() Title: DNA-RNA Hybrid Quadruplexes Reveal Interactions that Favor RNA Parallel Topologies. Authors: Haase, L. / Dickerhoff, J. / Weisz, K. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 142.5 KB | Display | ![]() |
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PDB format | ![]() | 116.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 320.3 KB | Display | ![]() |
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Full document | ![]() | 361.9 KB | Display | |
Data in XML | ![]() | 6.6 KB | Display | |
Data in CIF | ![]() | 10.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA/RNA hybrid | Mass: 7004.491 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
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Sample |
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Sample conditions | Ionic strength: 10 mM / Label: 1 / pH: 7 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 600 MHz |
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Processing
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Refinement |
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NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: all calculated structures submitted Conformers calculated total number: 10 / Conformers submitted total number: 10 |