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Open data
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Basic information
Entry | Database: PDB / ID: 6f81 | ||||||
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Title | AKR1B1 at 0.75 MGy radiation dose. | ||||||
![]() | Aldose reductase | ||||||
![]() | OXIDOREDUCTASE / oxidative stress / radiation damage / diabetes / non-genetic mutation | ||||||
Function / homology | ![]() glyceraldehyde oxidoreductase activity / Fructose biosynthesis / fructose biosynthetic process / L-glucuronate reductase activity / glycerol dehydrogenase (NADP+) activity / D/L-glyceraldehyde reductase / aldose reductase / C21-steroid hormone biosynthetic process / Pregnenolone biosynthesis / NADP-retinol dehydrogenase ...glyceraldehyde oxidoreductase activity / Fructose biosynthesis / fructose biosynthetic process / L-glucuronate reductase activity / glycerol dehydrogenase (NADP+) activity / D/L-glyceraldehyde reductase / aldose reductase / C21-steroid hormone biosynthetic process / Pregnenolone biosynthesis / NADP-retinol dehydrogenase / allyl-alcohol dehydrogenase / allyl-alcohol dehydrogenase activity / L-ascorbic acid biosynthetic process / metanephric collecting duct development / prostaglandin H2 endoperoxidase reductase activity / regulation of urine volume / all-trans-retinol dehydrogenase (NADP+) activity / renal water homeostasis / daunorubicin metabolic process / doxorubicin metabolic process / epithelial cell maturation / retinal dehydrogenase activity / aldose reductase (NADPH) activity / retinoid metabolic process / cellular hyperosmotic salinity response / carbohydrate metabolic process / electron transfer activity / negative regulation of apoptotic process / extracellular space / extracellular exosome / nucleoplasm / cytosol Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Castellvi, A. / Juanhuix, J. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Efficacy of aldose reductase inhibitors is affected by oxidative stress induced under X-ray irradiation. Authors: Castellvi, A. / Crespo, I. / Crosas, E. / Camara-Artigas, A. / Gavira, J.A. / Aranda, M.A.G. / Pares, X. / Farres, J. / Juanhuix, J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 175.8 KB | Display | ![]() |
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PDB format | ![]() | 137.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 718.9 KB | Display | ![]() |
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Full document | ![]() | 729.8 KB | Display | |
Data in XML | ![]() | 20.4 KB | Display | |
Data in CIF | ![]() | 30.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6f7rC ![]() 6f82C ![]() 6f84C ![]() 6f8oC ![]() 2j8tS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 35898.340 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() | ||
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#2: Chemical | ChemComp-NAP / | ||
#3: Chemical | #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.17 Å3/Da / Density % sol: 43.28 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 5 / Details: PEG 6000, AmCitrate |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: May 23, 2017 |
Radiation | Monochromator: Si(111) silicon crystal / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9017 Å / Relative weight: 1 |
Reflection | Resolution: 0.97→49.42 Å / Num. obs: 180328 / % possible obs: 99.7 % / Redundancy: 3.6 % / Biso Wilson estimate: 6.9 Å2 / CC1/2: 0.999 / Rmerge(I) obs: 0.034 / Rpim(I) all: 0.02 / Rrim(I) all: 0.039 / Net I/σ(I): 18.3 |
Reflection shell | Resolution: 0.97→0.99 Å / Redundancy: 3.4 % / Rmerge(I) obs: 0.287 / Num. unique obs: 8945 / CC1/2: 0.895 / Rpim(I) all: 0.179 / Rrim(I) all: 0.34 / % possible all: 99.8 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 2j8t Resolution: 0.97→10 Å / Cross valid method: FREE R-VALUE
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Displacement parameters | Biso mean: 14 Å2 | ||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 0.97→10 Å
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