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- PDB-6erl: Quadruplex with flipped tetrad formed by the c-myc promoter sequence -
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Open data
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Basic information
Entry | Database: PDB / ID: 6erl | ||||||
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Title | Quadruplex with flipped tetrad formed by the c-myc promoter sequence | ||||||
![]() | cmbr-481317 | ||||||
![]() | DNA / Quadruplex / G4 / 8-Bromo-Guanosine / tetrad flip | ||||||
Function / homology | DNA / DNA (> 10)![]() | ||||||
Biological species | ![]() | ||||||
Method | SOLUTION NMR / DGSA-distance geometry simulated annealing / simulated annealing / molecular dynamics | ||||||
![]() | Karg, B. / Weisz, K. | ||||||
![]() | ![]() Title: Loop Length Affects Syn-Anti Conformational Rearrangements in Parallel G-Quadruplexes. Authors: Karg, B. / Weisz, K. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 144.8 KB | Display | ![]() |
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PDB format | ![]() | 119.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 395.5 KB | Display | ![]() |
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Full document | ![]() | 465.8 KB | Display | |
Data in XML | ![]() | 12.2 KB | Display | |
Data in CIF | ![]() | 15.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 7324.094 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
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Sample |
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Sample conditions | Ionic strength: 10 mM / Label: 1 / pH: 7 pH* / Pressure: 1 atm / Temperature: 303 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement |
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NMR representative | Selection criteria: lowest energy | ||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 10 / Conformers submitted total number: 10 |