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- PDB-6e3b: STRUCTURE OF Siw14 CATALYTIC CORE -

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基本情報

登録情報
データベース: PDB / ID: 6e3b
タイトルSTRUCTURE OF Siw14 CATALYTIC CORE
要素Tyrosine-protein phosphatase SIW14
キーワードHYDROLASE / dual specificity phosphatase / inositol phosphate / VH1-like phosphatase
機能・相同性
機能・相同性情報


inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity / inositol-5-diphosphate-1,3,4,6-tetrakisphosphate diphosphatase activity / inositol diphosphate tetrakisphosphate diphosphatase activity / inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity / diphosphoinositol polyphosphate metabolic process / inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity / diphosphoinositol-polyphosphate diphosphatase / phosphatase activity / actin filament organization / cytosol / cytoplasm
類似検索 - 分子機能
Atypical dual-specificity phosphatase Siw14-like, plant and fungi / Atypical dual-specificity phosphatase Siw14-like / Tyrosine phosphatase family / Dual specificity protein phosphatase domain profile. / Dual specificity protein phosphatase domain / Protein tyrosine phosphatase superfamily / Protein-Tyrosine Phosphatase; Chain A / Tyrosine specific protein phosphatases active site. / Protein-tyrosine phosphatase, active site / Protein-tyrosine phosphatase-like ...Atypical dual-specificity phosphatase Siw14-like, plant and fungi / Atypical dual-specificity phosphatase Siw14-like / Tyrosine phosphatase family / Dual specificity protein phosphatase domain profile. / Dual specificity protein phosphatase domain / Protein tyrosine phosphatase superfamily / Protein-Tyrosine Phosphatase; Chain A / Tyrosine specific protein phosphatases active site. / Protein-tyrosine phosphatase, active site / Protein-tyrosine phosphatase-like / Alpha-Beta Complex / Alpha Beta
類似検索 - ドメイン・相同性
Inositol diphosphatase SIW14
類似検索 - 構成要素
生物種Saccharomyces cerevisiae (パン酵母)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 2.5 Å
データ登録者Florio, T. / Lokareddy, R. / Cingolani, G.
資金援助 米国, 3件
組織認可番号国
National Institutes of Health/National Cancer Institute (NIH/NCI)P30CA56036 米国
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)R01GM122844 米国
National Institutes of Health/Office of the DirectorS10OD017987 米国
引用ジャーナル: Biochemistry / 年: 2019
タイトル: Molecular Architecture of the Inositol Phosphatase Siw14.
著者: Florio, T.J. / Lokareddy, R.K. / Gillilan, R.E. / Cingolani, G.
履歴
登録2018年7月13日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02019年2月27日Provider: repository / タイプ: Initial release
改定 1.12019年12月4日Group: Author supporting evidence / カテゴリ: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization
改定 1.22023年10月11日Group: Data collection / Database references / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_ncs_dom_lim
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
A: Tyrosine-protein phosphatase SIW14
B: Tyrosine-protein phosphatase SIW14
C: Tyrosine-protein phosphatase SIW14
D: Tyrosine-protein phosphatase SIW14
E: Tyrosine-protein phosphatase SIW14
F: Tyrosine-protein phosphatase SIW14
G: Tyrosine-protein phosphatase SIW14
H: Tyrosine-protein phosphatase SIW14
I: Tyrosine-protein phosphatase SIW14
J: Tyrosine-protein phosphatase SIW14
K: Tyrosine-protein phosphatase SIW14
L: Tyrosine-protein phosphatase SIW14
M: Tyrosine-protein phosphatase SIW14
N: Tyrosine-protein phosphatase SIW14
O: Tyrosine-protein phosphatase SIW14
P: Tyrosine-protein phosphatase SIW14
Q: Tyrosine-protein phosphatase SIW14
R: Tyrosine-protein phosphatase SIW14
S: Tyrosine-protein phosphatase SIW14
T: Tyrosine-protein phosphatase SIW14
V: Tyrosine-protein phosphatase SIW14
W: Tyrosine-protein phosphatase SIW14
X: Tyrosine-protein phosphatase SIW14
Y: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)479,01748
ポリマ－476,71224
非ポリマー2,30624
水6,936385
1
A: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
2
B: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
3
C: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
4
D: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
5
E: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
6
F: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
7
G: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
8
H: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
9
I: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
10
J: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
11
K: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
12
L: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
13
M: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
14
N: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
15
O: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
16
P: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
17
Q: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
18
R: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
19
S: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
20
T: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
21
V: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
22
W: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
23
X: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
24
Y: Tyrosine-protein phosphatase SIW14
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)19,9592
ポリマ－19,8631
非ポリマー961
水181
タイプ名称対称操作数
identity operation1_555x,y,z1
単位格子
Length a, b, c (Å)92.467, 160.487, 360.572
Angle α, β, γ (deg.)90.000, 90.320, 90.000
Int Tables number5
Space group name H-MC121
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID詳細
11(chain A and (resid 113 through 116 or (resid 117...
21(chain B and (resid 113 through 116 or (resid 117...
31(chain C and (resid 113 through 116 or (resid 117...
41(chain D and (resid 113 through 116 or (resid 117...
51(chain E and (resid 113 through 116 or (resid 117...
61(chain F and (resid 113 through 116 or (resid 117...
71(chain G and (resid 113 through 116 or (resid 117...
81(chain H and (resid 113 through 116 or (resid 117...
91(chain I and (resid 113 through 116 or (resid 117...
101(chain J and (resid 113 through 116 or (resid 117...
111(chain K and (resid 113 through 116 or (resid 117...
121(chain L and (resid 113 through 116 or (resid 117...
131(chain M and (resid 113 through 116 or (resid 117...
141(chain N and (resid 113 through 116 or (resid 117...
151(chain O and (resid 113 through 116 or (resid 117...
161(chain P and (resid 113 through 116 or (resid 117...
171(chain Q and (resid 113 through 116 or (resid 117...
181(chain R and (resid 113 through 116 or (resid 117...
191(chain S and (resid 113 through 154 or resid 156...
201(chain T and (resid 113 through 116 or (resid 117...
211(chain V and (resid 113 through 116 or (resid 117...
221(chain W and (resid 113 through 116 or (resid 117...
231(chain X and (resid 113 through 116 or (resid 117...
241(chain Y and (resid 113 through 116 or (resid 117...

NCSドメイン領域:

Ens-ID: 1

Dom-IDComponent-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDSelection detailsAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
11ASNASNVALVAL(chain A and (resid 113 through 116 or (resid 117...AA113 - 1161 - 4
12ILEILEILEILE(chain A and (resid 113 through 116 or (resid 117...AA1175
13ASNASNTRPTRP(chain A and (resid 113 through 116 or (resid 117...AA113 - 2811 - 169
14ASNASNTRPTRP(chain A and (resid 113 through 116 or (resid 117...AA113 - 2811 - 169
15ASNASNTRPTRP(chain A and (resid 113 through 116 or (resid 117...AA113 - 2811 - 169
16ASNASNTRPTRP(chain A and (resid 113 through 116 or (resid 117...AA113 - 2811 - 169
17ASNASNTRPTRP(chain A and (resid 113 through 116 or (resid 117...AA113 - 2811 - 169
18ASNASNTRPTRP(chain A and (resid 113 through 116 or (resid 117...AA113 - 2811 - 169
21ASNASNVALVAL(chain B and (resid 113 through 116 or (resid 117...BB113 - 1161 - 4
22ILEILEILEILE(chain B and (resid 113 through 116 or (resid 117...BB1175
23ASNASNTRPTRP(chain B and (resid 113 through 116 or (resid 117...BB113 - 2811 - 169
24ASNASNTRPTRP(chain B and (resid 113 through 116 or (resid 117...BB113 - 2811 - 169
25ASNASNTRPTRP(chain B and (resid 113 through 116 or (resid 117...BB113 - 2811 - 169
26ASNASNTRPTRP(chain B and (resid 113 through 116 or (resid 117...BB113 - 2811 - 169
27ASNASNTRPTRP(chain B and (resid 113 through 116 or (resid 117...BB113 - 2811 - 169
31ASNASNVALVAL(chain C and (resid 113 through 116 or (resid 117...CC113 - 1161 - 4
32ILEILEILEILE(chain C and (resid 113 through 116 or (resid 117...CC1175
33ASNASNTRPTRP(chain C and (resid 113 through 116 or (resid 117...CC113 - 2811 - 169
34ASNASNTRPTRP(chain C and (resid 113 through 116 or (resid 117...CC113 - 2811 - 169
35ASNASNTRPTRP(chain C and (resid 113 through 116 or (resid 117...CC113 - 2811 - 169
36ASNASNTRPTRP(chain C and (resid 113 through 116 or (resid 117...CC113 - 2811 - 169
37ASNASNTRPTRP(chain C and (resid 113 through 116 or (resid 117...CC113 - 2811 - 169
38ASNASNTRPTRP(chain C and (resid 113 through 116 or (resid 117...CC113 - 2811 - 169
41ASNASNVALVAL(chain D and (resid 113 through 116 or (resid 117...DD113 - 1161 - 4
42ILEILEILEILE(chain D and (resid 113 through 116 or (resid 117...DD1175
43ASNASNTRPTRP(chain D and (resid 113 through 116 or (resid 117...DD113 - 2811 - 169
44ASNASNTRPTRP(chain D and (resid 113 through 116 or (resid 117...DD113 - 2811 - 169
45ASNASNTRPTRP(chain D and (resid 113 through 116 or (resid 117...DD113 - 2811 - 169
46ASNASNTRPTRP(chain D and (resid 113 through 116 or (resid 117...DD113 - 2811 - 169
47ASNASNTRPTRP(chain D and (resid 113 through 116 or (resid 117...DD113 - 2811 - 169
48ASNASNTRPTRP(chain D and (resid 113 through 116 or (resid 117...DD113 - 2811 - 169
51ASNASNVALVAL(chain E and (resid 113 through 116 or (resid 117...EE113 - 1161 - 4
52ILEILEILEILE(chain E and (resid 113 through 116 or (resid 117...EE1175
53ASNASNTRPTRP(chain E and (resid 113 through 116 or (resid 117...EE113 - 2811 - 169
54ASNASNTRPTRP(chain E and (resid 113 through 116 or (resid 117...EE113 - 2811 - 169
55ASNASNTRPTRP(chain E and (resid 113 through 116 or (resid 117...EE113 - 2811 - 169
56ASNASNTRPTRP(chain E and (resid 113 through 116 or (resid 117...EE113 - 2811 - 169
57ASNASNTRPTRP(chain E and (resid 113 through 116 or (resid 117...EE113 - 2811 - 169
58ASNASNTRPTRP(chain E and (resid 113 through 116 or (resid 117...EE113 - 2811 - 169
61ASNASNVALVAL(chain F and (resid 113 through 116 or (resid 117...FF113 - 1161 - 4
62ILEILEILEILE(chain F and (resid 113 through 116 or (resid 117...FF1175
63ASNASNTRPTRP(chain F and (resid 113 through 116 or (resid 117...FF113 - 2811 - 169
64ASNASNTRPTRP(chain F and (resid 113 through 116 or (resid 117...FF113 - 2811 - 169
65ASNASNTRPTRP(chain F and (resid 113 through 116 or (resid 117...FF113 - 2811 - 169
66ASNASNTRPTRP(chain F and (resid 113 through 116 or (resid 117...FF113 - 2811 - 169
67ASNASNTRPTRP(chain F and (resid 113 through 116 or (resid 117...FF113 - 2811 - 169
71ASNASNVALVAL(chain G and (resid 113 through 116 or (resid 117...GG113 - 1161 - 4
72ILEILEILEILE(chain G and (resid 113 through 116 or (resid 117...GG1175
73ASNASNTRPTRP(chain G and (resid 113 through 116 or (resid 117...GG113 - 2811 - 169
74ASNASNTRPTRP(chain G and (resid 113 through 116 or (resid 117...GG113 - 2811 - 169
75ASNASNTRPTRP(chain G and (resid 113 through 116 or (resid 117...GG113 - 2811 - 169
76ASNASNTRPTRP(chain G and (resid 113 through 116 or (resid 117...GG113 - 2811 - 169
77ASNASNTRPTRP(chain G and (resid 113 through 116 or (resid 117...GG113 - 2811 - 169
78ASNASNTRPTRP(chain G and (resid 113 through 116 or (resid 117...GG113 - 2811 - 169
81ASNASNVALVAL(chain H and (resid 113 through 116 or (resid 117...HH113 - 1161 - 4
82ILEILEILEILE(chain H and (resid 113 through 116 or (resid 117...HH1175
83ASNASNTRPTRP(chain H and (resid 113 through 116 or (resid 117...HH113 - 2811 - 169
84ASNASNTRPTRP(chain H and (resid 113 through 116 or (resid 117...HH113 - 2811 - 169
85ASNASNTRPTRP(chain H and (resid 113 through 116 or (resid 117...HH113 - 2811 - 169
86ASNASNTRPTRP(chain H and (resid 113 through 116 or (resid 117...HH113 - 2811 - 169
87ASNASNTRPTRP(chain H and (resid 113 through 116 or (resid 117...HH113 - 2811 - 169
88ASNASNTRPTRP(chain H and (resid 113 through 116 or (resid 117...HH113 - 2811 - 169
91ASNASNVALVAL(chain I and (resid 113 through 116 or (resid 117...II113 - 1161 - 4
92ILEILEILEILE(chain I and (resid 113 through 116 or (resid 117...II1175
93ASNASNTRPTRP(chain I and (resid 113 through 116 or (resid 117...II113 - 2811 - 169
94ASNASNTRPTRP(chain I and (resid 113 through 116 or (resid 117...II113 - 2811 - 169
95ASNASNTRPTRP(chain I and (resid 113 through 116 or (resid 117...II113 - 2811 - 169
96ASNASNTRPTRP(chain I and (resid 113 through 116 or (resid 117...II113 - 2811 - 169
97ASNASNTRPTRP(chain I and (resid 113 through 116 or (resid 117...II113 - 2811 - 169
98ASNASNTRPTRP(chain I and (resid 113 through 116 or (resid 117...II113 - 2811 - 169
101ASNASNVALVAL(chain J and (resid 113 through 116 or (resid 117...JJ113 - 1161 - 4
102ILEILEILEILE(chain J and (resid 113 through 116 or (resid 117...JJ1175
103ASNASNTRPTRP(chain J and (resid 113 through 116 or (resid 117...JJ113 - 2811 - 169
104ASNASNTRPTRP(chain J and (resid 113 through 116 or (resid 117...JJ113 - 2811 - 169
105ASNASNTRPTRP(chain J and (resid 113 through 116 or (resid 117...JJ113 - 2811 - 169
106ASNASNTRPTRP(chain J and (resid 113 through 116 or (resid 117...JJ113 - 2811 - 169
107ASNASNTRPTRP(chain J and (resid 113 through 116 or (resid 117...JJ113 - 2811 - 169
111ASNASNVALVAL(chain K and (resid 113 through 116 or (resid 117...KK113 - 1161 - 4
112ILEILEILEILE(chain K and (resid 113 through 116 or (resid 117...KK1175
113ASNASNTRPTRP(chain K and (resid 113 through 116 or (resid 117...KK113 - 2811 - 169
114ASNASNTRPTRP(chain K and (resid 113 through 116 or (resid 117...KK113 - 2811 - 169
115ASNASNTRPTRP(chain K and (resid 113 through 116 or (resid 117...KK113 - 2811 - 169
116ASNASNTRPTRP(chain K and (resid 113 through 116 or (resid 117...KK113 - 2811 - 169
117ASNASNTRPTRP(chain K and (resid 113 through 116 or (resid 117...KK113 - 2811 - 169
118ASNASNTRPTRP(chain K and (resid 113 through 116 or (resid 117...KK113 - 2811 - 169
121ASNASNVALVAL(chain L and (resid 113 through 116 or (resid 117...LL113 - 1161 - 4
122ILEILEILEILE(chain L and (resid 113 through 116 or (resid 117...LL1175
123ASNASNTRPTRP(chain L and (resid 113 through 116 or (resid 117...LL113 - 2811 - 169
124ASNASNTRPTRP(chain L and (resid 113 through 116 or (resid 117...LL113 - 2811 - 169
125ASNASNTRPTRP(chain L and (resid 113 through 116 or (resid 117...LL113 - 2811 - 169
126ASNASNTRPTRP(chain L and (resid 113 through 116 or (resid 117...LL113 - 2811 - 169
127ASNASNTRPTRP(chain L and (resid 113 through 116 or (resid 117...LL113 - 2811 - 169
128ASNASNTRPTRP(chain L and (resid 113 through 116 or (resid 117...LL113 - 2811 - 169
131ASNASNVALVAL(chain M and (resid 113 through 116 or (resid 117...MM113 - 1161 - 4
132ILEILEILEILE(chain M and (resid 113 through 116 or (resid 117...MM1175
133ASNASNTRPTRP(chain M and (resid 113 through 116 or (resid 117...MM113 - 2811 - 169
134ASNASNTRPTRP(chain M and (resid 113 through 116 or (resid 117...MM113 - 2811 - 169
135ASNASNTRPTRP(chain M and (resid 113 through 116 or (resid 117...MM113 - 2811 - 169
136ASNASNTRPTRP(chain M and (resid 113 through 116 or (resid 117...MM113 - 2811 - 169
137ASNASNTRPTRP(chain M and (resid 113 through 116 or (resid 117...MM113 - 2811 - 169
138ASNASNTRPTRP(chain M and (resid 113 through 116 or (resid 117...MM113 - 2811 - 169
141ASNASNVALVAL(chain N and (resid 113 through 116 or (resid 117...NN113 - 1161 - 4
142ILEILEILEILE(chain N and (resid 113 through 116 or (resid 117...NN1175
143ASNASNTRPTRP(chain N and (resid 113 through 116 or (resid 117...NN113 - 2811 - 169
144ASNASNTRPTRP(chain N and (resid 113 through 116 or (resid 117...NN113 - 2811 - 169
145ASNASNTRPTRP(chain N and (resid 113 through 116 or (resid 117...NN113 - 2811 - 169
146ASNASNTRPTRP(chain N and (resid 113 through 116 or (resid 117...NN113 - 2811 - 169
147ASNASNTRPTRP(chain N and (resid 113 through 116 or (resid 117...NN113 - 2811 - 169
151ASNASNVALVAL(chain O and (resid 113 through 116 or (resid 117...OO113 - 1161 - 4
152ILEILEILEILE(chain O and (resid 113 through 116 or (resid 117...OO1175
153ASNASNTRPTRP(chain O and (resid 113 through 116 or (resid 117...OO113 - 2811 - 169
154ASNASNTRPTRP(chain O and (resid 113 through 116 or (resid 117...OO113 - 2811 - 169
155ASNASNTRPTRP(chain O and (resid 113 through 116 or (resid 117...OO113 - 2811 - 169
156ASNASNTRPTRP(chain O and (resid 113 through 116 or (resid 117...OO113 - 2811 - 169
157ASNASNTRPTRP(chain O and (resid 113 through 116 or (resid 117...OO113 - 2811 - 169
158ASNASNTRPTRP(chain O and (resid 113 through 116 or (resid 117...OO113 - 2811 - 169
161ASNASNVALVAL(chain P and (resid 113 through 116 or (resid 117...PP113 - 1161 - 4
162ILEILEILEILE(chain P and (resid 113 through 116 or (resid 117...PP1175
163ASNASNTRPTRP(chain P and (resid 113 through 116 or (resid 117...PP113 - 2811 - 169
164ASNASNTRPTRP(chain P and (resid 113 through 116 or (resid 117...PP113 - 2811 - 169
165ASNASNTRPTRP(chain P and (resid 113 through 116 or (resid 117...PP113 - 2811 - 169
166ASNASNTRPTRP(chain P and (resid 113 through 116 or (resid 117...PP113 - 2811 - 169
167ASNASNTRPTRP(chain P and (resid 113 through 116 or (resid 117...PP113 - 2811 - 169
168ASNASNTRPTRP(chain P and (resid 113 through 116 or (resid 117...PP113 - 2811 - 169
171ASNASNVALVAL(chain Q and (resid 113 through 116 or (resid 117...QQ113 - 1161 - 4
172ILEILEILEILE(chain Q and (resid 113 through 116 or (resid 117...QQ1175
173ASNASNTRPTRP(chain Q and (resid 113 through 116 or (resid 117...QQ113 - 2811 - 169
174ASNASNTRPTRP(chain Q and (resid 113 through 116 or (resid 117...QQ113 - 2811 - 169
175ASNASNTRPTRP(chain Q and (resid 113 through 116 or (resid 117...QQ113 - 2811 - 169
176ASNASNTRPTRP(chain Q and (resid 113 through 116 or (resid 117...QQ113 - 2811 - 169
177ASNASNTRPTRP(chain Q and (resid 113 through 116 or (resid 117...QQ113 - 2811 - 169
178ASNASNTRPTRP(chain Q and (resid 113 through 116 or (resid 117...QQ113 - 2811 - 169
181ASNASNVALVAL(chain R and (resid 113 through 116 or (resid 117...RR113 - 1161 - 4
182ILEILEILEILE(chain R and (resid 113 through 116 or (resid 117...RR1175
183ASNASNTRPTRP(chain R and (resid 113 through 116 or (resid 117...RR113 - 2811 - 169
184ASNASNTRPTRP(chain R and (resid 113 through 116 or (resid 117...RR113 - 2811 - 169
185ASNASNTRPTRP(chain R and (resid 113 through 116 or (resid 117...RR113 - 2811 - 169
186ASNASNTRPTRP(chain R and (resid 113 through 116 or (resid 117...RR113 - 2811 - 169
187ASNASNTRPTRP(chain R and (resid 113 through 116 or (resid 117...RR113 - 2811 - 169
191ASNASNVALVAL(chain S and (resid 113 through 154 or resid 156...SS113 - 1541 - 42
192ILEILEASNASN(chain S and (resid 113 through 154 or resid 156...SS156 - 18344 - 71
193PROPROASNASN(chain S and (resid 113 through 154 or resid 156...SS186 - 21574 - 103
194GLYGLYTRPTRP(chain S and (resid 113 through 154 or resid 156...SS217 - 281105 - 169
201ASNASNVALVAL(chain T and (resid 113 through 116 or (resid 117...TT113 - 1161 - 4
202ILEILEILEILE(chain T and (resid 113 through 116 or (resid 117...TT1175
203ASNASNTRPTRP(chain T and (resid 113 through 116 or (resid 117...TT113 - 2811 - 169
204ASNASNTRPTRP(chain T and (resid 113 through 116 or (resid 117...TT113 - 2811 - 169
205ASNASNTRPTRP(chain T and (resid 113 through 116 or (resid 117...TT113 - 2811 - 169
206ASNASNTRPTRP(chain T and (resid 113 through 116 or (resid 117...TT113 - 2811 - 169
207ASNASNTRPTRP(chain T and (resid 113 through 116 or (resid 117...TT113 - 2811 - 169
211ASNASNVALVAL(chain V and (resid 113 through 116 or (resid 117...VU113 - 1161 - 4
212ILEILEILEILE(chain V and (resid 113 through 116 or (resid 117...VU1175
213ASNASNTRPTRP(chain V and (resid 113 through 116 or (resid 117...VU113 - 2811 - 169
214ASNASNTRPTRP(chain V and (resid 113 through 116 or (resid 117...VU113 - 2811 - 169
215ASNASNTRPTRP(chain V and (resid 113 through 116 or (resid 117...VU113 - 2811 - 169
216ASNASNTRPTRP(chain V and (resid 113 through 116 or (resid 117...VU113 - 2811 - 169
217ASNASNTRPTRP(chain V and (resid 113 through 116 or (resid 117...VU113 - 2811 - 169
221ASNASNVALVAL(chain W and (resid 113 through 116 or (resid 117...WV113 - 1161 - 4
222ILEILEILEILE(chain W and (resid 113 through 116 or (resid 117...WV1175
223ASNASNTRPTRP(chain W and (resid 113 through 116 or (resid 117...WV113 - 2811 - 169
224ASNASNTRPTRP(chain W and (resid 113 through 116 or (resid 117...WV113 - 2811 - 169
225ASNASNTRPTRP(chain W and (resid 113 through 116 or (resid 117...WV113 - 2811 - 169
226ASNASNTRPTRP(chain W and (resid 113 through 116 or (resid 117...WV113 - 2811 - 169
227ASNASNTRPTRP(chain W and (resid 113 through 116 or (resid 117...WV113 - 2811 - 169
231ASNASNVALVAL(chain X and (resid 113 through 116 or (resid 117...XW113 - 1161 - 4
232ILEILEILEILE(chain X and (resid 113 through 116 or (resid 117...XW1175
233ASNASNTRPTRP(chain X and (resid 113 through 116 or (resid 117...XW113 - 2811 - 169
234ASNASNTRPTRP(chain X and (resid 113 through 116 or (resid 117...XW113 - 2811 - 169
235ASNASNTRPTRP(chain X and (resid 113 through 116 or (resid 117...XW113 - 2811 - 169
236ASNASNTRPTRP(chain X and (resid 113 through 116 or (resid 117...XW113 - 2811 - 169
237ASNASNTRPTRP(chain X and (resid 113 through 116 or (resid 117...XW113 - 2811 - 169
241ASNASNVALVAL(chain Y and (resid 113 through 116 or (resid 117...YX113 - 1161 - 4
242ILEILEILEILE(chain Y and (resid 113 through 116 or (resid 117...YX1175
243ASNASNTRPTRP(chain Y and (resid 113 through 116 or (resid 117...YX113 - 2811 - 169
244ASNASNTRPTRP(chain Y and (resid 113 through 116 or (resid 117...YX113 - 2811 - 169
245ASNASNTRPTRP(chain Y and (resid 113 through 116 or (resid 117...YX113 - 2811 - 169
246ASNASNTRPTRP(chain Y and (resid 113 through 116 or (resid 117...YX113 - 2811 - 169

-
要素

#1: タンパク質 ...
Tyrosine-protein phosphatase SIW14


分子量: 19862.980 Da / 分子数: 24 / 断片: catalytic core / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (パン酵母)
遺伝子: SIW14 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P53965, protein-tyrosine-phosphatase
#2: 化合物...
ChemComp-SO4 / SULFATE ION / 硫酸ジアニオン


分子量: 96.063 Da / 分子数: 24 / 由来タイプ: 合成 / 式: SO4
#3: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 385 / 由来タイプ: 天然 / 式: H2O

-
実験情報

-
実験

実験手法: X線回折 / 使用した結晶の数: 1

-
試料調製

結晶マシュー密度: 2.81 Å3/Da / 溶媒含有率: 56.17 %
結晶化温度: 295 K / 手法: 蒸気拡散法, ハンギングドロップ法 / pH: 7.5
詳細: 0.2 M magnesium chloride, 0.1 M HEPES pH 7.5, 17-25% (w/v) PEG3350

-
データ収集

回折平均測定温度: 100 K / Serial crystal experiment: N
放射光源由来: シンクロトロン / サイト: SSRL / ビームライン: BL9-2 / 波長: 0.97 Å
検出器タイプ: DECTRIS PILATUS 6M / 検出器: PIXEL / 日付: 2017年2月17日
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 0.97 Å / 相対比: 1
Reflection twinOperator: h,-k,-l / Fraction: 0.45
反射解像度: 2.5→50 Å / Num. obs: 166746 / % possible obs: 91.3 % / 冗長度: 2.3 % / Biso Wilson estimate: 37.4 Å2 / Rpim(I) all: 0.0105 / Rsym value: 0.0135 / Net I/σ(I): 11.5
反射 シェル解像度: 2.5→2.59 Å / 冗長度: 2 % / Mean I/σ(I) obs: 1.9 / Rpim(I) all: 0.0609 / Rsym value: 0.0788

-
解析

ソフトウェア
名称バージョン分類
PHENIX1.14_3260精密化
PDB_EXTRACT3.24データ抽出
HKL-2000データ削減
HKL-2000データスケーリング
PHASER位相決定
精密化構造決定の手法: 分子置換
開始モデル: 2q47

2q47


解像度: 2.5→14.995 Å / 交差検証法: THROUGHOUT / σ(F): 232.13 / 位相誤差: 26.91 / 立体化学のターゲット値: TWIN_LSQ_F
Rfactor反射数%反射
Rfree0.2463 2202 1.35 %
Rwork0.2298 157333 -
obs0.2429 163094 90.4 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL
原子変位パラメータBiso max: 164.16 Å2 / Biso mean: 55.5306 Å2 / Biso min: 2 Å2
精密化ステップサイクル: final / 解像度: 2.5→14.995 Å
タンパク質核酸リガンド溶媒全体
原子数33542 0 120 385 34047
Biso mean--47.74 34.38 -
残基数----4055
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-ID数Refine-IDRmsタイプ
11A11808X-RAY DIFFRACTION2.954TORSIONAL
12B11808X-RAY DIFFRACTION2.954TORSIONAL
13C11808X-RAY DIFFRACTION2.954TORSIONAL
14D11808X-RAY DIFFRACTION2.954TORSIONAL
15E11808X-RAY DIFFRACTION2.954TORSIONAL
16F11808X-RAY DIFFRACTION2.954TORSIONAL
17G11808X-RAY DIFFRACTION2.954TORSIONAL
18H11808X-RAY DIFFRACTION2.954TORSIONAL
19I11808X-RAY DIFFRACTION2.954TORSIONAL
110J11808X-RAY DIFFRACTION2.954TORSIONAL
111K11808X-RAY DIFFRACTION2.954TORSIONAL
112L11808X-RAY DIFFRACTION2.954TORSIONAL
113M11808X-RAY DIFFRACTION2.954TORSIONAL
114N11808X-RAY DIFFRACTION2.954TORSIONAL
115O11808X-RAY DIFFRACTION2.954TORSIONAL
116P11808X-RAY DIFFRACTION2.954TORSIONAL
117Q11808X-RAY DIFFRACTION2.954TORSIONAL
118R11808X-RAY DIFFRACTION2.954TORSIONAL
119S11808X-RAY DIFFRACTION2.954TORSIONAL
120T11808X-RAY DIFFRACTION2.954TORSIONAL
121V11808X-RAY DIFFRACTION2.954TORSIONAL
122W11808X-RAY DIFFRACTION2.954TORSIONAL
123X11808X-RAY DIFFRACTION2.954TORSIONAL
124Y11808X-RAY DIFFRACTION2.954TORSIONAL
LS精密化 シェル

Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0 / Total num. of bins used: 14

解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkNum. reflection all% reflection obs (%)
2.5073-2.56860.38021880.343898601004879
2.5686-2.63650.37671060.338110561116288
2.6365-2.71210.36161020.3446113221142490
2.7121-2.79730.31412020.3267113971159991
2.7973-2.89430.36071030.3158115931169692
2.8943-3.00620.3281020.3042115621166493
3.0062-3.13790.34312100.2933112011141189
3.1379-3.2960.29961140.2706117381185293
3.296-3.49180.27311180.2547115041162292
3.4918-3.74440.2661980.2339113671156590
3.7444-4.09080.23531050.2188111471125288
4.0908-4.61590.2011980.1908112291142789
4.6159-5.58890.2376850.1912110001108588
5.5889-9.18980.18411640.2166113571152189
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
10.67610.19130.26450.09920.24230.8248-0.04610.10960.94440.1206-0.30110.3598-0.46680.0586-0.00750.3245-0.0348-0.00480.5418-0.07340.732611.066520.4489127.9856
20.0421-0.0783-0.03780.12670.090.1199-0.0873-0.32230.90330.3414-0.29040.38950.27840.1841-0.00040.45370.02030.02270.4620.0670.715621.54210.6319131.0088
30.704-0.4765-1.51840.75372.2096.45420.31510.07540.9665-0.68030.0957-0.377-1.09970.45920.47640.30640.1113-0.03550.38450.13680.939214.039119.347121.3478
40.3932-0.1920.13430.4961-0.47260.4294-0.05880.06910.6155-0.66890.0428-0.5629-0.0025-0.12030.00180.51480.01210.1510.38770.13650.843520.145411.7794117.9846
50.3471-0.3553-0.00320.3642-0.0540.1103-0.13250.68860.3361-0.3114-0.1775-0.28090.36970.27590.00320.5118-0.0790.17140.54310.21570.838921.643816.4106113.0597
60.28560.0551-0.66431.6792-0.47881.5873-0.0428-0.0829-0.6031-0.0945-0.303-0.1190.9515-0.5083-1.40261.22960.06880.12890.40460.26210.414213.9508-6.8968116.9062
70.1455-0.0988-0.1290.3036-0.05230.21610.2870.68450.19070.9648-0.1649-0.43040.22040.3935-0.00430.46410.04420.02120.36860.01830.768727.8469-0.6491121.7317
80.1758-0.2571-0.09730.47570.01960.73820.0836-0.31411.0056-0.2405-0.2053-0.2133-0.09570.4377-0.00060.35770.01250.01490.54590.15930.713320.63068.1227123.6709
90.1209-0.1045-0.10810.0820.09180.1596-0.75140.567-0.3192-0.73640.26-0.460.53660.4577-0.01130.5654-0.13680.06830.42950.05140.636521.449-0.4436129.2845
103.6218-3.1185-0.98533.25310.67350.40020.6786-0.52451.0153-0.08810.0206-0.8885-0.43460.23420.21641.0417-0.04960.07910.352-0.00190.327816.6018-1.3567136.6987
110.6842-0.25140.44310.1309-0.1870.5440.31260.35910.1797-0.53040.12740.5212-0.01930.3935-0.00080.4984-0.05070.04550.42610.00620.582712.6828-6.9978128.621
120.02790.0147-0.19980.008-0.10941.54950.2137-0.051-0.6385-0.1421-0.3787-0.36720.23060.4817-0.00930.67080.14140.17810.40720.09750.890334.4519-5.3324128.0523
130.4655-0.57030.60510.7133-0.75260.7946-0.0335-0.0058-0.2310.39140.6009-0.0151-0.3073-0.22870.04810.6004-0.1014-0.17510.5099-0.06831.041734.16615.684133.4649
140.3912-0.11130.09650.6790.06710.52850.26450.14220.0123-0.4483-0.29090.55230.6756-0.1329-0.00460.61590.08790.02040.49130.00960.5379-24.0204-0.7462126.9765
150.1890.34580.1720.80710.77281.4044-0.1125-0.28020.0020.13180.010.0970.5345-0.50220.12470.6606-0.1153-0.06490.5627-0.17730.1376-20.990913.3932127.0491
160.198-0.1907-0.43960.20680.36191.3011-0.2390.4408-0.9148-0.0145-0.0757-0.07240.1909-0.9258-0.00380.5075-0.07590.08520.4052-0.06780.423-24.2260.911119.6016
170.6509-0.10780.38740.1855-0.10260.2386-0.15850.6632-0.14890.1234-0.22880.19990.39560.0971-0.01210.57490.0502-0.05540.4911-0.07590.361-20.61788.9206115.1425
181.2511-1.08911.61930.9431-1.40872.12740.08960.6679-0.1444-0.9111-0.46260.06810.26040.4691-0.42010.4442-0.0371-0.00650.456-0.20020.7535-24.78576.7119110.086
191.18080.23050.25841.71560.60190.70890.1127-0.1225-0.43630.8722-0.2873-0.85910.17520.86050.03140.917-0.1641-0.07470.83730.25040.5794-1.369912.6522113.4871
200.10710.01910.10860.0761-0.04220.1381-0.49780.49880.0719-0.7581-0.0628-0.359-0.52730.243-0.00020.77320.04480.00960.35430.09360.5307-13.169122.3297115.5636
210.40150.54270.15790.72790.35710.42790.2374-0.01680.2997-0.6527-0.1920.1879-0.21680.17250.00070.7928-0.05990.03040.3976-0.04980.3332-17.989412.9622120.1697
220.1563-0.2029-0.01050.25750.02320.04060.33790.59420.7138-0.2193-0.5553-0.5941-0.0932-0.2634-0.00580.46850.088-0.0150.404-0.07610.4145-11.297518.2399124.8114
230.31490.1623-0.00530.22360.07540.1835-0.3407-0.46550.22050.16050.61580.3050.6980.09480.00440.655-0.03310.00120.3291-0.02550.4573-8.491916.1819132.9677
240.5411-0.02580.00570.3118-0.12250.15410.45360.2478-0.46010.5569-0.5234-0.5303-0.48240.33420.00140.5107-0.1039-0.01360.60640.08410.7404-2.275216.8066124.9869
250.2261-0.0518-0.28070.0823-0.1431.0271-0.11910.06840.8113-0.1499-0.58190.0582-0.1880.3816-0.00490.9677-0.0652-0.21270.41340.1590.9555-15.345732.6584120.6836
262.5592-0.23431.29070.0205-0.12330.64090.2643-0.6383-0.011-0.28880.18830.1373-0.7561-0.30660.13271.0223-0.11180.110.4272-0.15070.634-23.017627.0207127.3544
270.727-0.17170.01140.55140.65590.8634-0.109-0.5789-1.01940.3580.05860.0308-0.0240.0582-0.00180.38940.00040.0940.36870.02390.51877.3524-23.0328128.9447
280.5431-0.3344-0.30180.41080.14360.13810.1198-0.0749-0.4185-0.6287-0.1356-0.07670.1084-0.1261-0.00020.5487-0.0461-0.00070.3147-0.00690.66514.277-27.0808118.0783
290.1565-0.2571-0.54350.41321.06433.0385-0.03090.1392-0.0217-0.28660.40120.1393-1.7380.25790.1770.7967-0.0487-0.07270.5685-0.17910.7915-11.6126-17.3328116.8611
301.1509-0.5042-0.8111.07490.43511.2684-0.10960.1961-0.11420.13020.12790.53060.1199-0.1098-0.0010.3906-0.04110.01190.39940.01860.6221-11.4014-18.603128.2622
310.30850.2358-0.57770.7478-1.02372.5445-0.1860.2759-0.5337-0.04010.75640.50690.6438-0.3690.21090.76390.11760.21720.4940.12910.7619-12.9858-33.3894133.1986
320.07060.12430.12060.7079-0.45940.6041-0.20760.08730.1106-0.69430.08360.725-0.0681-0.3033-0.00630.4686-0.01730.04830.33930.04110.6027-69.2992-31.974498.4835
330.4410.1231-0.40480.55650.07520.4079-0.2708-0.18450.2172-0.326-0.0028-0.2281-0.0585-0.01090.00030.60280.00640.11870.267-0.02090.655-67.3601-38.7431106.192
342.8328-0.57170.02320.72330.57850.785-0.36040.18310.9740.17310.0007-0.14020.4770.7857-0.12410.94750.03970.29340.66720.0720.5417-61.4943-39.9619109.8398
350.9479-0.53450.26990.49850.33540.8180.00130.0154-0.26280.2347-0.2110.04740.37760.106900.567-0.02540.11940.3358-0.05690.5195-58.5445-44.448496.2144
360.7879-0.3397-0.70070.5267-0.03010.7036-0.22080.1922-0.3934-0.48260.2935-0.11270.132-0.0468-0.00330.7052-0.12540.01240.36180.03130.6831-56.5901-50.872795.0281
371.041-0.59620.2371.12280.68920.8222-0.1197-0.01920.16550.12840.0641-0.21720.07550.01450.00010.469-0.01410.07750.4535-0.04480.3726-40.4239-5.0417104.3584
381.2919-0.6140.30050.6885-0.13770.8759-0.313-0.2681-0.8630.8790.2231-0.04370.0615-0.4587-0.00580.9111-0.19660.14320.7073-0.08970.5688-47.7048-10.0384113.6513
390.88580.41390.26320.81220.41871.18350.1152-0.1559-0.0151-0.047-0.10710.3146-0.0551-0.29580.00050.490.0247-0.00560.3996-0.03850.5092-57.5215-7.2032100.6359
400.3711-0.28560.46450.4784-0.4260.602-0.0166-0.2042-0.42670.0617-0.2619-0.45050.33530.0792-0.00070.64330.0097-0.00160.40170.03810.4522-30.313-45.09396.4183
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1290.6564-0.61560.56070.5686-0.35960.7066-0.05730.24610.06320.25450.20640.1452-0.063-0.2109-0.00040.5104-0.02260.06070.48150.01240.48719.560517.39650.2655
1300.02630.08040.07660.17650.20760.23090.02510.56460.57350.60320.0992-0.2959-0.3204-0.0682-0.01450.84840.04330.05150.50140.03430.787617.206731.678649.2468
1310.5301-0.5219-0.0710.4964-0.16010.5046-0.12190.3199-0.1869-0.19720.17330.2739-0.1542-0.2872-0.00080.73470.01590.12990.59870.06090.345-5.4082-21.062453.6005
1320.0887-0.18910.11960.2586-0.27620.20270.021-0.1881-0.3650.4485-0.07720.23660.2266-0.1023-0.00010.5953-0.080.01150.50680.04050.4239-4.3681-21.890865.7856
1331.69520.2906-0.75650.48060.50521.2590.03280.61230.47460.04250.0485-0.1405-0.9974-0.2947-0.01471.0331-0.1461-0.08751.15890.15680.232312.8215-6.100264.4366
1340.657-0.02810.29760.14990.04210.36230.0658-0.1569-0.11890.2331-0.3004-0.7189-0.0730.19780.0010.5448-0.00280.03960.40730.03540.42968.9768-19.717958.3883
1351.19680.80230.14661.0268-0.63261.3468-0.1695-0.1338-0.03680.31350.6409-0.16340.03730.29270.00480.5385-0.03920.03360.5345-0.00650.414113.5715-17.455250.8461
1360.6832-0.0938-0.21681.0093-0.10810.7297-0.6978-0.32430.41670.31960.2874-0.7981-0.12360.2487-0.11110.58060.0758-0.17880.4967-0.23090.865721.99517.3178146.6578
1370.20610.06340.10880.34170.04420.1342-0.09-0.4478-0.26590.49510.3298-0.24140.2208-0.21851.49331.36540.71-0.490.6731-0.72130.916812.06615.5121156.2881
1380.7151-0.1874-0.04650.3722-0.82871.9077-0.6288-0.33840.58020.26720.5702-0.36320.0619-0.33930.10720.65440.1742-0.12950.4529-0.2220.61657.777816.586141.6621
1390.3089-0.09390.20260.13270.03240.1425-0.14461.2580.26680.4681-0.29250.38750.5040.1905-0.02090.97270.1096-0.21680.725-0.20441.069415.121230.845141.9602
1400.2565-0.8806-0.10663.09150.34380.0602-0.64060.086-0.24930.11250.25341.6482-0.17780.1659-0.04650.6464-0.04070.13740.48830.11440.6102-13.8818-19.7674142.3966
1410.3399-0.0803-0.44650.42810.28810.8376-0.57590.2643-0.11420.05550.40440.6595-0.031-0.6746-0.67860.50740.07060.40990.77910.38880.6476-7.8191-22.1235146.9379
1421.23831.2360.6343.10071.02411.224-0.0327-0.541-0.96270.78040.5816-0.5414-0.22450.31930.21110.39520.08610.15940.77370.2490.6752-4.7311-22.1157154.7336
1430.569-0.15240.29050.4145-0.25480.4143-0.3236-0.0705-0.01670.04010.1326-0.1641-0.147-0.1104-0.36850.87070.92850.40971.2380.6590.9982-8.8398-24.4173159.5553
1440.2208-0.2108-0.04030.6754-0.3460.31-0.0681-0.22570.7227-0.2268-0.29260.7274-0.82070.1558-0.01291.07220.06230.03360.98210.13680.98.4496-6.9299157.3198
1450.497-0.4694-0.34580.45450.32630.24960.1218-0.37130.2527-0.33570.0986-0.86170.05990.66610.02080.85240.2522-0.00290.72180.06660.459310.7899-21.8767155.1324
1460.58020.29910.0920.84840.08680.6783-0.3736-0.4356-0.09840.57340.6095-0.10460.1595-0.37840.0110.53870.25230.17560.69030.22430.53430.6233-21.4053150.0235
1470.00720.0203-0.03570.0934-0.33111.1807-0.24250.07840.99280.2621-0.3407-0.0004-0.12640.3003-0.20210.71250.19430.08920.3398-0.07870.59558.9121-18.038145.8669
1480.65570.8129-0.27210.9118-0.29130.4566-0.2265-0.36680.26530.76790.07530.3843-0.35960.2515-0.00230.63420.04420.07890.4641-0.03830.41459.6311-11.0849141.3333
1490.2171-0.17270.04410.1823-0.10420.1214-0.1619-0.4017-0.37620.049-0.3354-0.31031.08120.48590.00840.69040.1650.03880.70360.10330.844318.7428-26.2749150.2914
1500.55880.6581.47230.77561.72153.8296-0.1588-0.1696-0.6705-0.08210.9865-0.35970.84860.6420.22530.5932-0.02650.16030.9774-0.0460.594710.4635-32.8201143.3495
1510.8604-0.0591-0.2520.38850.43970.8339-0.58060.05250.15450.28110.1886-0.33110.0112-0.2675-0.02430.63570.11490.1190.5155-0.05960.5293-18.100416.4778138.6251
1520.0947-0.0257-0.10480.10430.06590.1170.0921-0.85520.8660.14830.17210.083-0.46960.00490.01660.6350.0674-0.11890.5488-0.10280.5446-16.391421.5068146.0212
1530.2975-0.4666-0.28311.8390.4410.2609-0.6031-1.0076-0.18941.10710.3097-0.06810.0865-0.0945-1.26310.30210.3969-0.2670.80010.06760.4805-22.451514.6726150.285
1540.5849-0.3320.23530.193-0.04290.6888-0.288-0.78330.20440.08010.2127-0.0568-0.4875-0.09990.00220.7610.3188-0.10150.8224-0.02380.4255-23.77920.226154.3679
1550.011-0.0787-0.04020.50750.27190.17920.1748-1.1591-0.60730.09-0.1772-0.20590.57210.87040.01420.87950.05530.26681.28620.3810.9733-22.4287-1.2024152.6175
1560.08210.09320.0250.29690.32110.32210.1882-0.4411-0.21640.2983-0.1410.29220.7533-0.2286-0.00290.51970.05160.04260.5635-0.01210.5448-23.57066.1883143.7538
1570.8648-0.0107-0.01980.37420.05440.11390.39660.4769-0.68690.3903-0.2069-0.1243-0.3487-0.37650.02360.51830.03010.18260.54150.08160.689-18.7882-1.3703134.3112
1580.4656-0.2770.45270.71690.31280.98760.433-0.40870.13430.53220.44860.18960.6704-0.31650.04410.87630.09040.18320.58450.17330.7494-17.8596-5.9765143.2599
1590.1569-0.1226-0.3283.66381.14220.8330.2919-1.1416-0.7936-0.6757-0.28650.52080.1254-0.5630.02910.38610.0582-0.02081.02010.06720.7708-37.46331.6662139.0262
1600.35660.05990.09240.84440.11640.3274-0.26460.0412-0.1760.5378-0.130.1996-0.3433-0.0659-0.05321.285-0.0399-0.12270.4309-0.16911.8109-60.994-5.281173.2831
1610.118-0.10850.09650.109-0.09070.0661-0.6331-0.4284-0.34560.8444-0.1124-0.1109-0.42930.4435-0.00180.7918-0.07-0.1170.5560.09070.931-46.692-1.5023172.6245
1620.70990.3310.26180.2324-0.05010.7854-0.29230.51560.08480.22860.4006-0.6628-0.8782-0.65080.00380.6470.13380.09830.74250.13190.6853-59.8566-4.0583166.1081
1630.39830.0662-0.14050.33270.11650.43880.35110.30860.3089-0.06010.3223-0.7050.05030.35560.00960.8730.0020.06840.7753-0.14040.4581-51.5376-3.2483160.8609
1640.0392-0.09210.04910.21310.0250.26790.23561.30070.7319-0.4465-0.1791-0.04920.70210.12780.00160.91360.0680.03030.7385-0.05440.7604-55.8359-0.0131156.1542
1650.1293-0.04050.1490.3421-0.19090.2644-0.48960.3417-0.38370.0081-0.31480.12081.2701-0.2202-0.00311.31930.37230.27841.65090.2731.1399-38.3962-17.7502157.7896
1660.36360.12550.13540.1398-0.11680.30440.26690.5242-0.0751-0.0250.32210.0144-0.3160.0498-0.00090.99130.1258-0.01290.93080.07140.6642-36.5109-2.08160.798
1670.0423-0.1104-0.00170.4218-0.05410.9288-0.0553-0.7456-0.299-0.17820.4246-1.33020.44031.24180.07070.6738-0.0627-0.09990.669-0.20941.2028-46.8278-4.2919165.5179
1681.0940.38240.53390.18670.16430.3643-0.8340.5643-1.22980.55341.05830.17730.27930.12160.0170.98290.05610.12750.59810.0570.8176-37.6193-9.7657174.5235
1690.26690.0039-0.12820.10910.28960.74990.2058-0.85580.0529-0.13180.6935-0.5487-0.6468-0.42460.04230.68550.0916-0.03280.55770.08321.1587-36.3961-17.9491169.7172
1700.43690.1751-0.22290.1603-0.25620.42310.10430.42440.4651.2010.114-0.0376-0.22540.2723-0.02141.2076-0.2330.18270.7985-0.14580.8501-30.9883.5943167.8287
1711.0769-0.0393-0.04030.05670.15670.3989-0.09590.2118-0.9439-0.2885-0.3289-0.3504-0.1730.50610.01170.69130.1429-0.01410.63970.01540.5414-59.5013-46.6378175.0886
1720.9938-0.3869-0.10610.80790.09860.11920.72730.4133-1.16170.4513-0.237-0.57450.28550.13470.11640.52580.1833-0.13640.5481-0.26280.7495-65.6705-42.2221172.1311
1730.7189-0.29421.12041.1397-0.6712.8088-0.10440.8354-0.1548-0.614-0.487-0.1007-0.26610.0448-3.05670.84530.4251-0.04830.9604-0.2940.1386-68.8326-39.2777165.0359
1740.298-0.0050.41410.45230.20850.68570.1690.29120.1765-0.0369-0.59510.22550.3772-0.1144-0.8380.57180.18680.10031.3185-0.39070.4803-70.5136-44.2315160.5329
1752.0435-0.5721-0.78522.15730.90880.53960.0178-0.12020.5716-0.0298-0.1394-0.3983-0.77490.050.52581.70560.4141-0.36181.43740.28070.7267-63.4092-20.666161.4076
1761.67220.36360.38870.5806-0.09970.4773-0.52670.52681.10640.08250.27120.30250.21910.1322-0.03120.49540.18250.04030.6708-0.04680.7015-73.0231-31.3626168.8727
1771.05210.42510.0380.224-0.02830.36370.54770.13281.5713-0.1183-0.4823-0.3159-0.1411-0.157-0.00920.59340.04850.15380.44370.02150.7214-66.8443-24.8296179.2074
1780.07920.14380.16640.20340.2680.23040.5569-0.23380.39060.20020.00230.0386-0.2238-0.1490.0021.00070.07710.21360.55840.11411.2368-71.7323-20.2439172.8822
1790.01170.0672-0.01150.31920.03360.52691.11090.29740.47870.1242-0.12450.4637-0.76340.09520.19720.61050.092-0.02390.62430.26770.6115-82.5243-31.6361180.2459
1800.8935-0.3158-0.55681.8789-0.46341.0734-0.03850.35260.57960.55660.0092-0.2391-0.20040.4451-0.21940.70530.27840.14610.8537-0.0757-0.0885-25.9594-32.3421171.5825
1810.09640.0960.0870.13190.12820.1549-0.17060.15780.018-0.1734-0.0141-0.0243-0.5844-0.1844-0.21310.79590.44150.08881.28030.550.1524-24.4037-28.0861163.8647
1820.1886-0.06130.14670.3523-0.14440.12080.44890.82990.332-0.3399-0.3486-0.1044-0.5705-0.5155-0.00050.6240.11470.05041.0759-0.00110.4778-26.2869-36.1446157.525
1830.940.0845-0.20250.3341-0.04880.2127-0.07310.6071-0.04170.00660.2298-0.070.15630.28070.26731.36940.5902-0.2771.3176-0.18440.2475-47.6921-40.9939160.272
1841.8014-0.25590.2490.4735-0.41790.4930.3161.3162-0.93020.29830.02610.35360.5904-0.36630.35290.48920.1832-0.01390.7745-0.31010.6308-33.9183-43.9799166.7352
1850.4035-0.2583-0.46610.79050.19131.14240.3616-0.1006-0.091-0.98730.1858-0.1842-0.7235-0.43320.07180.45110.1008-0.01060.52480.05090.5825-43.2133-41.0695175.9281
1860.09660.08420.01660.0863-0.05910.25680.2676-0.1483-0.8641-0.0939-0.3038-0.32610.4199-0.3585-0.02280.81920.10040.08280.6192-0.29120.8816-31.0933-56.1882171.4188
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1chain 'A' and (resid 113 through 122 )A113 - 122
2X-RAY DIFFRACTION2chain 'A' and (resid 123 through 132 )A123 - 132
3X-RAY DIFFRACTION3chain 'A' and (resid 133 through 145 )A133 - 145
4X-RAY DIFFRACTION4chain 'A' and (resid 146 through 161 )A146 - 161
5X-RAY DIFFRACTION5chain 'A' and (resid 162 through 177 )A162 - 177
6X-RAY DIFFRACTION6chain 'A' and (resid 178 through 191 )A178 - 191
7X-RAY DIFFRACTION7chain 'A' and (resid 192 through 203 )A192 - 203
8X-RAY DIFFRACTION8chain 'A' and (resid 204 through 219 )A204 - 219
9X-RAY DIFFRACTION9chain 'A' and (resid 220 through 231 )A220 - 231
10X-RAY DIFFRACTION10chain 'A' and (resid 232 through 247 )A232 - 247
11X-RAY DIFFRACTION11chain 'A' and (resid 248 through 261 )A248 - 261
12X-RAY DIFFRACTION12chain 'A' and (resid 262 through 273 )A262 - 273
13X-RAY DIFFRACTION13chain 'A' and (resid 274 through 281 )A274 - 281
14X-RAY DIFFRACTION14chain 'B' and (resid 113 through 122 )B113 - 122
15X-RAY DIFFRACTION15chain 'B' and (resid 123 through 132 )B123 - 132
16X-RAY DIFFRACTION16chain 'B' and (resid 133 through 145 )B133 - 145
17X-RAY DIFFRACTION17chain 'B' and (resid 146 through 161 )B146 - 161
18X-RAY DIFFRACTION18chain 'B' and (resid 162 through 177 )B162 - 177
19X-RAY DIFFRACTION19chain 'B' and (resid 178 through 191 )B178 - 191
20X-RAY DIFFRACTION20chain 'B' and (resid 192 through 202 )B192 - 202
21X-RAY DIFFRACTION21chain 'B' and (resid 203 through 219 )B203 - 219
22X-RAY DIFFRACTION22chain 'B' and (resid 220 through 231 )B220 - 231
23X-RAY DIFFRACTION23chain 'B' and (resid 232 through 247 )B232 - 247
24X-RAY DIFFRACTION24chain 'B' and (resid 248 through 264 )B248 - 264
25X-RAY DIFFRACTION25chain 'B' and (resid 265 through 273 )B265 - 273
26X-RAY DIFFRACTION26chain 'B' and (resid 274 through 281 )B274 - 281
27X-RAY DIFFRACTION27chain 'C' and (resid 113 through 145 )C113 - 145
28X-RAY DIFFRACTION28chain 'C' and (resid 146 through 177 )C146 - 177
29X-RAY DIFFRACTION29chain 'C' and (resid 178 through 202 )C178 - 202
30X-RAY DIFFRACTION30chain 'C' and (resid 203 through 273 )C203 - 273
31X-RAY DIFFRACTION31chain 'C' and (resid 274 through 281 )C274 - 281
32X-RAY DIFFRACTION32chain 'D' and (resid 113 through 145 )D113 - 145
33X-RAY DIFFRACTION33chain 'D' and (resid 146 through 161 )D146 - 161
34X-RAY DIFFRACTION34chain 'D' and (resid 162 through 191 )D162 - 191
35X-RAY DIFFRACTION35chain 'D' and (resid 192 through 247 )D192 - 247
36X-RAY DIFFRACTION36chain 'D' and (resid 248 through 281 )D248 - 281
37X-RAY DIFFRACTION37chain 'E' and (resid 113 through 161 )E113 - 161
38X-RAY DIFFRACTION38chain 'E' and (resid 162 through 191 )E162 - 191
39X-RAY DIFFRACTION39chain 'E' and (resid 192 through 281 )E192 - 281
40X-RAY DIFFRACTION40chain 'F' and (resid 113 through 145 )F113 - 145
41X-RAY DIFFRACTION41chain 'F' and (resid 146 through 191 )F146 - 191
42X-RAY DIFFRACTION42chain 'F' and (resid 192 through 281 )F192 - 281
43X-RAY DIFFRACTION43chain 'G' and (resid 113 through 122 )G113 - 122
44X-RAY DIFFRACTION44chain 'G' and (resid 123 through 132 )G123 - 132
45X-RAY DIFFRACTION45chain 'G' and (resid 133 through 145 )G133 - 145
46X-RAY DIFFRACTION46chain 'G' and (resid 146 through 177 )G146 - 177
47X-RAY DIFFRACTION47chain 'G' and (resid 178 through 191 )G178 - 191
48X-RAY DIFFRACTION48chain 'G' and (resid 192 through 202 )G192 - 202
49X-RAY DIFFRACTION49chain 'G' and (resid 203 through 219 )G203 - 219
50X-RAY DIFFRACTION50chain 'G' and (resid 220 through 231 )G220 - 231
51X-RAY DIFFRACTION51chain 'G' and (resid 232 through 261 )G232 - 261
52X-RAY DIFFRACTION52chain 'G' and (resid 262 through 273 )G262 - 273
53X-RAY DIFFRACTION53chain 'G' and (resid 274 through 281 )G274 - 281
54X-RAY DIFFRACTION54chain 'H' and (resid 113 through 161 )H113 - 161
55X-RAY DIFFRACTION55chain 'H' and (resid 162 through 177 )H162 - 177
56X-RAY DIFFRACTION56chain 'H' and (resid 178 through 203 )H178 - 203
57X-RAY DIFFRACTION57chain 'H' and (resid 204 through 219 )H204 - 219
58X-RAY DIFFRACTION58chain 'H' and (resid 220 through 261 )H220 - 261
59X-RAY DIFFRACTION59chain 'H' and (resid 262 through 281 )H262 - 281
60X-RAY DIFFRACTION60chain 'I' and (resid 113 through 122 )I113 - 122
61X-RAY DIFFRACTION61chain 'I' and (resid 123 through 132 )I123 - 132
62X-RAY DIFFRACTION62chain 'I' and (resid 133 through 161 )I133 - 161
63X-RAY DIFFRACTION63chain 'I' and (resid 162 through 177 )I162 - 177
64X-RAY DIFFRACTION64chain 'I' and (resid 178 through 191 )I178 - 191
65X-RAY DIFFRACTION65chain 'I' and (resid 192 through 231 )I192 - 231
66X-RAY DIFFRACTION66chain 'I' and (resid 232 through 247 )I232 - 247
67X-RAY DIFFRACTION67chain 'I' and (resid 248 through 261 )I248 - 261
68X-RAY DIFFRACTION68chain 'I' and (resid 262 through 281 )I262 - 281
69X-RAY DIFFRACTION69chain 'J' and (resid 113 through 132 )J113 - 132
70X-RAY DIFFRACTION70chain 'J' and (resid 133 through 145 )J133 - 145
71X-RAY DIFFRACTION71chain 'J' and (resid 146 through 161 )J146 - 161
72X-RAY DIFFRACTION72chain 'J' and (resid 162 through 177 )J162 - 177
73X-RAY DIFFRACTION73chain 'J' and (resid 178 through 191 )J178 - 191
74X-RAY DIFFRACTION74chain 'J' and (resid 192 through 219 )J192 - 219
75X-RAY DIFFRACTION75chain 'J' and (resid 220 through 247 )J220 - 247
76X-RAY DIFFRACTION76chain 'J' and (resid 248 through 261 )J248 - 261
77X-RAY DIFFRACTION77chain 'J' and (resid 262 through 281 )J262 - 281
78X-RAY DIFFRACTION78chain 'K' and (resid 113 through 144 )K113 - 144
79X-RAY DIFFRACTION79chain 'K' and (resid 145 through 177 )K145 - 177
80X-RAY DIFFRACTION80chain 'K' and (resid 178 through 202 )K178 - 202
81X-RAY DIFFRACTION81chain 'K' and (resid 203 through 281 )K203 - 281
82X-RAY DIFFRACTION82chain 'L' and (resid 113 through 122 )L113 - 122
83X-RAY DIFFRACTION83chain 'L' and (resid 123 through 132 )L123 - 132
84X-RAY DIFFRACTION84chain 'L' and (resid 133 through 161 )L133 - 161
85X-RAY DIFFRACTION85chain 'L' and (resid 162 through 177 )L162 - 177
86X-RAY DIFFRACTION86chain 'L' and (resid 178 through 219 )L178 - 219
87X-RAY DIFFRACTION87chain 'L' and (resid 220 through 231 )L220 - 231
88X-RAY DIFFRACTION88chain 'L' and (resid 232 through 247 )L232 - 247
89X-RAY DIFFRACTION89chain 'L' and (resid 248 through 273 )L248 - 273
90X-RAY DIFFRACTION90chain 'L' and (resid 274 through 281 )L274 - 281
91X-RAY DIFFRACTION91chain 'M' and (resid 113 through 132 )M113 - 132
92X-RAY DIFFRACTION92chain 'M' and (resid 133 through 145 )M133 - 145
93X-RAY DIFFRACTION93chain 'M' and (resid 146 through 161 )M146 - 161
94X-RAY DIFFRACTION94chain 'M' and (resid 162 through 191 )M162 - 191
95X-RAY DIFFRACTION95chain 'M' and (resid 192 through 231 )M192 - 231
96X-RAY DIFFRACTION96chain 'M' and (resid 232 through 264 )M232 - 264
97X-RAY DIFFRACTION97chain 'M' and (resid 265 through 281 )M265 - 281
98X-RAY DIFFRACTION98chain 'N' and (resid 113 through 145 )N113 - 145
99X-RAY DIFFRACTION99chain 'N' and (resid 146 through 177 )N146 - 177
100X-RAY DIFFRACTION100chain 'N' and (resid 178 through 191 )N178 - 191
101X-RAY DIFFRACTION101chain 'N' and (resid 192 through 231 )N192 - 231
102X-RAY DIFFRACTION102chain 'N' and (resid 232 through 247 )N232 - 247
103X-RAY DIFFRACTION103chain 'N' and (resid 248 through 281 )N248 - 281
104X-RAY DIFFRACTION104chain 'O' and (resid 113 through 122 )O113 - 122
105X-RAY DIFFRACTION105chain 'O' and (resid 123 through 132 )O123 - 132
106X-RAY DIFFRACTION106chain 'O' and (resid 133 through 145 )O133 - 145
107X-RAY DIFFRACTION107chain 'O' and (resid 146 through 161 )O146 - 161
108X-RAY DIFFRACTION108chain 'O' and (resid 162 through 191 )O162 - 191
109X-RAY DIFFRACTION109chain 'O' and (resid 192 through 202 )O192 - 202
110X-RAY DIFFRACTION110chain 'O' and (resid 203 through 261 )O203 - 261
111X-RAY DIFFRACTION111chain 'O' and (resid 262 through 273 )O262 - 273
112X-RAY DIFFRACTION112chain 'O' and (resid 274 through 281 )O274 - 281
113X-RAY DIFFRACTION113chain 'P' and (resid 113 through 122 )P113 - 122
114X-RAY DIFFRACTION114chain 'P' and (resid 123 through 132 )P123 - 132
115X-RAY DIFFRACTION115chain 'P' and (resid 133 through 145 )P133 - 145
116X-RAY DIFFRACTION116chain 'P' and (resid 146 through 161 )P146 - 161
117X-RAY DIFFRACTION117chain 'P' and (resid 162 through 177 )P162 - 177
118X-RAY DIFFRACTION118chain 'P' and (resid 178 through 191 )P178 - 191
119X-RAY DIFFRACTION119chain 'P' and (resid 192 through 202 )P192 - 202
120X-RAY DIFFRACTION120chain 'P' and (resid 203 through 231 )P203 - 231
121X-RAY DIFFRACTION121chain 'P' and (resid 232 through 247 )P232 - 247
122X-RAY DIFFRACTION122chain 'P' and (resid 248 through 264 )P248 - 264
123X-RAY DIFFRACTION123chain 'P' and (resid 265 through 273 )P265 - 273
124X-RAY DIFFRACTION124chain 'P' and (resid 274 through 281 )P274 - 281
125X-RAY DIFFRACTION125chain 'Q' and (resid 113 through 161 )Q113 - 161
126X-RAY DIFFRACTION126chain 'Q' and (resid 162 through 177 )Q162 - 177
127X-RAY DIFFRACTION127chain 'Q' and (resid 178 through 191 )Q178 - 191
128X-RAY DIFFRACTION128chain 'Q' and (resid 192 through 202 )Q192 - 202
129X-RAY DIFFRACTION129chain 'Q' and (resid 203 through 261 )Q203 - 261
130X-RAY DIFFRACTION130chain 'Q' and (resid 262 through 281 )Q262 - 281
131X-RAY DIFFRACTION131chain 'R' and (resid 113 through 132 )R113 - 132
132X-RAY DIFFRACTION132chain 'R' and (resid 133 through 177 )R133 - 177
133X-RAY DIFFRACTION133chain 'R' and (resid 178 through 191 )R178 - 191
134X-RAY DIFFRACTION134chain 'R' and (resid 192 through 231 )R192 - 231
135X-RAY DIFFRACTION135chain 'R' and (resid 232 through 281 )R232 - 281
136X-RAY DIFFRACTION136chain 'S' and (resid 113 through 154 )S113 - 154
137X-RAY DIFFRACTION137chain 'S' and (resid 155 through 202 )S155 - 202
138X-RAY DIFFRACTION138chain 'S' and (resid 203 through 261 )S203 - 261
139X-RAY DIFFRACTION139chain 'S' and (resid 262 through 281 )S262 - 281
140X-RAY DIFFRACTION140chain 'T' and (resid 113 through 122 )T113 - 122
141X-RAY DIFFRACTION141chain 'T' and (resid 123 through 145 )T123 - 145
142X-RAY DIFFRACTION142chain 'T' and (resid 146 through 161 )T146 - 161
143X-RAY DIFFRACTION143chain 'T' and (resid 162 through 177 )T162 - 177
144X-RAY DIFFRACTION144chain 'T' and (resid 178 through 191 )T178 - 191
145X-RAY DIFFRACTION145chain 'T' and (resid 192 through 202 )T192 - 202
146X-RAY DIFFRACTION146chain 'T' and (resid 203 through 219 )T203 - 219
147X-RAY DIFFRACTION147chain 'T' and (resid 220 through 231 )T220 - 231
148X-RAY DIFFRACTION148chain 'T' and (resid 232 through 261 )T232 - 261
149X-RAY DIFFRACTION149chain 'T' and (resid 262 through 273 )T262 - 273
150X-RAY DIFFRACTION150chain 'T' and (resid 274 through 281 )T274 - 281
151X-RAY DIFFRACTION151chain 'V' and (resid 113 through 132 )V113 - 132
152X-RAY DIFFRACTION152chain 'V' and (resid 133 through 145 )V133 - 145
153X-RAY DIFFRACTION153chain 'V' and (resid 146 through 161 )V146 - 161
154X-RAY DIFFRACTION154chain 'V' and (resid 162 through 177 )V162 - 177
155X-RAY DIFFRACTION155chain 'V' and (resid 178 through 202 )V178 - 202
156X-RAY DIFFRACTION156chain 'V' and (resid 203 through 231 )V203 - 231
157X-RAY DIFFRACTION157chain 'V' and (resid 232 through 247 )V232 - 247
158X-RAY DIFFRACTION158chain 'V' and (resid 248 through 264 )V248 - 264
159X-RAY DIFFRACTION159chain 'V' and (resid 265 through 281 )V265 - 281
160X-RAY DIFFRACTION160chain 'W' and (resid 113 through 122 )W113 - 122
161X-RAY DIFFRACTION161chain 'W' and (resid 123 through 132 )W123 - 132
162X-RAY DIFFRACTION162chain 'W' and (resid 133 through 145 )W133 - 145
163X-RAY DIFFRACTION163chain 'W' and (resid 146 through 161 )W146 - 161
164X-RAY DIFFRACTION164chain 'W' and (resid 162 through 177 )W162 - 177
165X-RAY DIFFRACTION165chain 'W' and (resid 178 through 192 )W178 - 192
166X-RAY DIFFRACTION166chain 'W' and (resid 193 through 203 )W193 - 203
167X-RAY DIFFRACTION167chain 'W' and (resid 204 through 219 )W204 - 219
168X-RAY DIFFRACTION168chain 'W' and (resid 220 through 247 )W220 - 247
169X-RAY DIFFRACTION169chain 'W' and (resid 248 through 261 )W248 - 261
170X-RAY DIFFRACTION170chain 'W' and (resid 262 through 281 )W262 - 281
171X-RAY DIFFRACTION171chain 'X' and (resid 113 through 122 )X113 - 122
172X-RAY DIFFRACTION172chain 'X' and (resid 123 through 145 )X123 - 145
173X-RAY DIFFRACTION173chain 'X' and (resid 146 through 161 )X146 - 161
174X-RAY DIFFRACTION174chain 'X' and (resid 162 through 177 )X162 - 177
175X-RAY DIFFRACTION175chain 'X' and (resid 178 through 191 )X178 - 191
176X-RAY DIFFRACTION176chain 'X' and (resid 192 through 219 )X192 - 219
177X-RAY DIFFRACTION177chain 'X' and (resid 220 through 247 )X220 - 247
178X-RAY DIFFRACTION178chain 'X' and (resid 248 through 273 )X248 - 273
179X-RAY DIFFRACTION179chain 'X' and (resid 274 through 281 )X274 - 281
180X-RAY DIFFRACTION180chain 'Y' and (resid 113 through 132 )Y113 - 132
181X-RAY DIFFRACTION181chain 'Y' and (resid 133 through 145 )Y133 - 145
182X-RAY DIFFRACTION182chain 'Y' and (resid 146 through 177 )Y146 - 177
183X-RAY DIFFRACTION183chain 'Y' and (resid 178 through 192 )Y178 - 192
184X-RAY DIFFRACTION184chain 'Y' and (resid 193 through 231 )Y193 - 231
185X-RAY DIFFRACTION185chain 'Y' and (resid 232 through 261 )Y232 - 261
186X-RAY DIFFRACTION186chain 'Y' and (resid 262 through 281 )Y262 - 281

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る