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- PDB-1knb: CRYSTAL STRUCTURE OF THE RECEPTOR-BINDING DOMAIN OF ADENOVIRUS TY... -
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Basic information
Entry | Database: PDB / ID: 1knb | ||||||
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Title | CRYSTAL STRUCTURE OF THE RECEPTOR-BINDING DOMAIN OF ADENOVIRUS TYPE 5 FIBER PROTEIN AT 1.7 ANGSTROMS RESOLUTION | ||||||
![]() | ADENOVIRUS TYPE 5 FIBER PROTEIN | ||||||
![]() | CELL RECEPTOR RECOGNITION | ||||||
Function / homology | ![]() viral capsid, fiber / adhesion receptor-mediated virion attachment to host cell / cell adhesion / symbiont entry into host cell / host cell nucleus Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Xia, D. / Henry, L.J. / Gerard, R.D. / Deisenhofer, J. | ||||||
![]() | ![]() Title: Crystal structure of the receptor-binding domain of adenovirus type 5 fiber protein at 1.7 A resolution. Authors: Xia, D. / Henry, L.J. / Gerard, R.D. / Deisenhofer, J. #1: ![]() Title: Characterization of the Knob Domain of the Adenovirus Type 5 Fiber Protein Expressed in Escherichia Coli Authors: Henry, L.J. / Xia, D. / Wilke, M.E. / Deisenhofer, J. / Gerard, R.D. #2: ![]() Title: Structure of Adenovirus Fiber: Morphology of Single Fibers Authors: Ruigrok, R.W.H. / Barge, A. / Albiges-Rizo, C. / Dayan, S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Download
PDBx/mmCIF format | ![]() | 61.5 KB | Display | ![]() |
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PDB format | ![]() | 46.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 363.1 KB | Display | ![]() |
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Full document | ![]() | 365.1 KB | Display | |
Data in XML | ![]() | 5.3 KB | Display | |
Data in CIF | ![]() | 8.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO 447 |
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Components
#1: Protein | Mass: 21256.695 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.53 Å3/Da / Density % sol: 51.33 % | ||||||||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 1.7→12 Å / Num. obs: 17633 / % possible obs: 73.9 % / Observed criterion σ(I): 2 |
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Processing
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Refinement | Rfactor Rwork: 0.158 / Rfactor obs: 0.158 / Highest resolution: 1.7 Å Details: IN THE MONOMER STRUCTURE, THERE ARE TWO REGIONS WHERE B FACTORS ARE HIGH. ONE REGION IS FROM 396 - 397 WHICH IS LOCATED AT THE N-TERMINUS. THE OTHER REGION IS BETWEEN BETA STRANDS H AND I FOR RESIDUES 540 - 546. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.7 Å
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Refine LS restraints |
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