Entry | Database: PDB / ID: 6ahy |
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Title | Wnt signaling complex |
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Components | - Frizzled-8
- Proto-oncogene Wnt-3
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Keywords | SIGNALING PROTEIN / Wnt signaling / Canonical Wnt pathway |
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Function / homology | Function and homology information
: / Spemann organizer formation at the anterior end of the primitive streak / : / : / positive regulation of collateral sprouting in absence of injury / Wnt-Frizzled-LRP5/6 complex / Regulation of FZD by ubiquitination / Asymmetric localization of PCP proteins / WNT ligand biogenesis and trafficking / canonical Wnt signaling pathway involved in mesenchymal stem cell differentiation ...: / Spemann organizer formation at the anterior end of the primitive streak / : / : / positive regulation of collateral sprouting in absence of injury / Wnt-Frizzled-LRP5/6 complex / Regulation of FZD by ubiquitination / Asymmetric localization of PCP proteins / WNT ligand biogenesis and trafficking / canonical Wnt signaling pathway involved in mesenchymal stem cell differentiation / negative regulation of axon extension involved in axon guidance / non-canonical Wnt signaling pathway / dorsal/ventral axis specification / limb bud formation / Wnt receptor activity / gamete generation / Wnt-protein binding / mammary gland epithelium development / head morphogenesis / frizzled binding / embryonic forelimb morphogenesis / Wnt signalosome / Class B/2 (Secretin family receptors) / embryonic hindlimb morphogenesis / anterior/posterior axis specification / neuronal dense core vesicle / mesoderm formation / regulation of neurogenesis / positive regulation of Wnt signaling pathway / canonical Wnt signaling pathway / cell fate commitment / cellular response to retinoic acid / extracellular matrix / stem cell proliferation / TCF dependent signaling in response to WNT / cytokine activity / PDZ domain binding / G protein-coupled receptor activity / axon guidance / cell morphogenesis / neuron differentiation / Wnt signaling pathway / Golgi lumen / endocytic vesicle membrane / T cell differentiation in thymus / angiogenesis / receptor ligand activity / positive regulation of protein phosphorylation / protein domain specific binding / endoplasmic reticulum lumen / signaling receptor binding / ubiquitin protein ligase binding / positive regulation of gene expression / Golgi apparatus / extracellular space / extracellular exosome / extracellular region / plasma membraneSimilarity search - Function Wnt-3 protein / Frizzled 8, cysteine-rich domain / Wnt protein, conserved site / Wnt-1 family signature. / Wnt / Wnt, C-terminal domain / wnt family / found in Wnt-1 / Frizzled cysteine-rich domain / Frizzled cysteine-rich domain ...Wnt-3 protein / Frizzled 8, cysteine-rich domain / Wnt protein, conserved site / Wnt-1 family signature. / Wnt / Wnt, C-terminal domain / wnt family / found in Wnt-1 / Frizzled cysteine-rich domain / Frizzled cysteine-rich domain / Frizzled/Smoothened, transmembrane domain / Frizzled/Smoothened family membrane region / Frizzled/Smoothened family membrane region / Frizzled/secreted frizzled-related protein / Frizzled / Frizzled domain / Frizzled cysteine-rich domain superfamily / Fz domain / Frizzled (fz) domain profile. / GPCR, family 2-like / G-protein coupled receptors family 2 profile 2. / Orthogonal Bundle / Mainly AlphaSimilarity search - Domain/homology |
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Biological species | ![](img/tx_mammal.gif) Mus musculus (house mouse)
Homo sapiens (human) |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.8 Å |
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Authors | Hirai, H. / Arimori, T. / Matoba, K. / Mihara, E. / Takagi, J. |
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Citation | Journal: Nat.Struct.Mol.Biol. / Year: 2019 Title: Crystal structure of a mammalian Wnt-frizzled complex. Authors: Hirai, H. / Matoba, K. / Mihara, E. / Arimori, T. / Takagi, J. |
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History | Deposition | Aug 21, 2018 | Deposition site: PDBJ / Processing site: PDBJ |
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Revision 1.0 | May 1, 2019 | Provider: repository / Type: Initial release |
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Revision 1.1 | May 15, 2019 | Group: Data collection / Database references / Category: citation / citation_author Item: _citation.pdbx_database_id_PubMed / _citation.title ..._citation.pdbx_database_id_PubMed / _citation.title / _citation_author.identifier_ORCID / _citation_author.name |
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Revision 1.2 | May 22, 2019 | Group: Data collection / Database references / Category: citation Item: _citation.journal_volume / _citation.page_first / _citation.page_last |
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Revision 2.0 | Jul 29, 2020 | Group: Advisory / Atomic model ...Advisory / Atomic model / Data collection / Derived calculations / Structure summary Category: atom_site / chem_comp ...atom_site / chem_comp / entity / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / pdbx_unobs_or_zero_occ_atoms / struct_asym / struct_conn / struct_site / struct_site_gen Item: _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ..._atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_atom_id / _atom_site.auth_comp_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _atom_site.label_atom_id / _atom_site.label_comp_id / _atom_site.label_entity_id / _atom_site.occupancy / _atom_site.type_symbol / _chem_comp.name / _chem_comp.type / _pdbx_entity_nonpoly.entity_id / _pdbx_entity_nonpoly.name / _pdbx_struct_assembly_gen.asym_id_list / _pdbx_unobs_or_zero_occ_atoms.label_asym_id / _struct_conn.pdbx_role / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id Description: Carbohydrate remediation / Provider: repository / Type: Remediation |
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Revision 2.1 | Nov 22, 2023 | Group: Data collection / Database references ...Data collection / Database references / Refinement description / Structure summary Category: chem_comp / chem_comp_atom ...chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item: _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession |
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