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- PDB-6a5e: Crystal structure of plant peptide RALF23 in complex with FER and LLG2 -
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Open data
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Basic information
Entry | Database: PDB / ID: 6a5e | |||||||||
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Title | Crystal structure of plant peptide RALF23 in complex with FER and LLG2 | |||||||||
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Function / homology | ![]() pollen tube reception / filiform apparatus / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | |||||||||
Biological species | ![]() ![]() ![]() ![]() ![]() ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Xiao, Y. / Chai, J. | |||||||||
![]() | ![]() Title: Mechanisms of RALF peptide perception by a heterotypic receptor complex. Authors: Xiao, Y. / Stegmann, M. / Han, Z. / DeFalco, T.A. / Parys, K. / Xu, L. / Belkhadir, Y. / Zipfel, C. / Chai, J. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 196.1 KB | Display | ![]() |
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PDB format | ![]() | 159.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 43363.887 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() Production host: Insect cell expression vector pTIE1 (others) References: UniProt: Q9SCZ4, ![]() #2: Protein | Mass: 9370.615 Da / Num. of mol.: 2 / Fragment: UNP residues 42-125 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() Production host: Insect cell expression vector pTIE1 (others) References: UniProt: Q6NLF4 #3: Protein/peptide | Mass: 1786.089 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() Production host: Insect cell expression vector pTIE1 (others) References: UniProt: Q9LUS7*PLUS #4: Polysaccharide | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ![]() Source method: isolated from a genetically manipulated source #5: Sugar | ChemComp-NAG / ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.96 Å3/Da / Density % sol: 58.47 % |
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Crystal grow![]() | Temperature: 291 K / Method: vapor diffusion, hanging drop Details: 0.2 M sodium malonate, 25% w/v Polyethylene glycol 3350 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MAR scanner 345 mm plate / Detector: IMAGE PLATE / Date: Jan 1, 2017 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.76→50 Å / Num. obs: 32854 / % possible obs: 97.2 % / Redundancy: 3.9 % / Rsym value: 0.096 / Net I/σ(I): 20.89 |
Reflection shell | Resolution: 2.76→2.83 Å / Num. unique obs: 3150 / Rsym value: 0.969 |
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Processing
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Refinement | Method to determine structure![]() ![]() Details: SF FILE CONTAINS FRIEDEL PAIRS UNDER I/F_MINUS AND I/F_PLUS COLUMNS.
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.766→42.607 Å
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Refine LS restraints |
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LS refinement shell |
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